Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,530,751 – 13,530,846 |
Length | 95 |
Max. P | 0.757339 |
Location | 13,530,751 – 13,530,846 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.90 |
Mean single sequence MFE | -41.80 |
Consensus MFE | -32.76 |
Energy contribution | -33.65 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.25 |
Mean z-score | -2.31 |
Structure conservation index | 0.78 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13530751 95 - 22224390 GAGGGGGCAGUGACGUCUGCUCAUCGAAGCCGAGCUCAAGGUUCUCAGCAGACGGCUCAGAGAGGCUGACAUUGCCUCCCUCUCUCGCU---------CCGCCA ((((((((((((.((((((((....((((((........)))).))))))))))..((((.....))))))))))).))))).......---------...... ( -41.00) >DroSec_CAF1 12866 95 - 1 GAGGGGGCAGUGCCGUCUGCUCAUCGAAGCCGAGCUCAAGGUUCUCAGCAGACGGCUCAGAGAGGCAGACAUUGCCUCCCUCUCUCGCU---------CCGCCA ...(((((.(.((((((((((....((((((........)))).)))))))))))).)(((((((.((.......)).))))))).)))---------)).... ( -44.30) >DroSim_CAF1 13622 95 - 1 GAGGGGGCAGUGCCGUCUGCUCAUCGAAGCCGAGCUCAAGGUUCUCAGCAGACGGCUCAGAGAGGCGGACAUUGCCUCUCUCUCUCGCU---------CCGUCA ((.(((((.(.((((((((((....((((((........)))).)))))))))))).)(((((((((.....))))))))).....)))---------)).)). ( -50.30) >DroEre_CAF1 13096 95 - 1 GAGGGGGCAGUGGCGUCUGCUCAUCGAAGCCGAGCUCAAGGUUCUCAGCAGGCGGCUCAGAGAGGCGGACAUUGCCUCCCUCUCUCGCU---------CCGCCA (((((((((((...(((((((..((..(((((.(((..........)))...)))))..))..))))))))))))).))))).......---------...... ( -41.90) >DroYak_CAF1 14873 95 - 1 GAGGGGGCAGUGGCGUCUGCUCAUCGAAGCCGAACUCAAGGUUCUCAGCAGGCGGCUCAGAGAGGCGGACAUUGCCUCCCUCUCUCGCU---------CCGCCA (((((((((((...(((((((..((..((((((((.....))))...(....)))))..))..))))))))))))).))))).......---------...... ( -41.30) >DroAna_CAF1 17705 101 - 1 GAGCGGACAGCGACGUCGACUCAUCGAAGCUGAGCUCAAGUUUCGUAGCAGGCAGCUAAUGGAAGCUGUGA---CUUCCCUCACACCCUCCUUGGGCUUCUCCC ((((...((((....((((....)))).)))).)))).((((((.((((.....))))...))))))((((---......)))).(((.....)))........ ( -32.00) >consensus GAGGGGGCAGUGACGUCUGCUCAUCGAAGCCGAGCUCAAGGUUCUCAGCAGACGGCUCAGAGAGGCGGACAUUGCCUCCCUCUCUCGCU_________CCGCCA (((((((((((...(((((((..((..(((((.(((..........)))...)))))..))..))))))))))))).)))))...................... (-32.76 = -33.65 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:47 2006