| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,530,111 – 13,530,207 |
| Length | 96 |
| Max. P | 0.873453 |
| Location | 13,530,111 – 13,530,207 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 67.73 |
| Mean single sequence MFE | -18.09 |
| Consensus MFE | -12.07 |
| Energy contribution | -12.63 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13530111 96 - 22224390 ---------AUAUGUAGAUGCCAUGCGUUUUCAGACUUGGGCGCAAAAUGCACGUGUGCUCUCCCGCGUUAGAGUAUUAAACAAAAACACAGAA-AAACAACAUAA ---------.(((((.(..((...))((((....((((..((((.....(((....)))......))))..))))...))))............-...).))))). ( -18.50) >DroSim_CAF1 12997 89 - 1 GUAUCACUAUUUUAUAGAUGCCAUGCGUUUUCAGACUUGAUCGCAAAAUGCAGUUGUGCUCUACCGCGUUAGAGUAUUAAACAAAAACA----------------- (((((...........)))))..((((((((..((.....))..))))))))(((((((((((......))))))))..))).......----------------- ( -18.00) >DroEre_CAF1 12348 98 - 1 CUAUUGCCAUCUUAAAGAUGCCAUGCGUUUCCAUACUUCAGCCCAAAAUGCAG--GUGCUCUACU--GUGAGAGUACUAAAAAAAAACAUACAAAAAACAAC---- ....((.((((.....)))).))(((((((...............)))))))(--(((((((...--...))))))))........................---- ( -17.76) >consensus _UAU__C_AUUUUAUAGAUGCCAUGCGUUUUCAGACUUGAGCGCAAAAUGCAG_UGUGCUCUACCGCGUUAGAGUAUUAAACAAAAACA_A_AA_AAACAAC____ ..................(((..(((((((........)))))))....)))...(((((((........)))))))............................. (-12.07 = -12.63 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:46 2006