Locus 5182

Sequence ID X_DroMel_CAF1
Location 13,528,839 – 13,528,941
Length 102
Max. P 0.624737
window8404

overview

Window 4

Location 13,528,839 – 13,528,941
Length 102
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 79.12
Mean single sequence MFE -28.30
Consensus MFE -13.98
Energy contribution -14.54
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.96
Structure conservation index 0.49
SVM decision value 0.19
SVM RNA-class probability 0.624737
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13528839 102 + 22224390
---------ACCUCGGUGAUUCGAUGAUUAUAUUAAUCGAUA-CUUGGCAAUCGCAGAUUAUCUUUUACGAUUAGUGAUUGCUGGGGCGCGAUGGUAUUACGAGUAUGAUAC
---------...(((...(((((.((((.((....((((...-((..((((((((.((((.........)))).))))))))..))...)))).))))))))))).)))... ( -29.10)
>DroSec_CAF1 11016 103 + 1
---------ACCACGGUGAUUCGAUGAAUAUAUUAAUCGAUCCCGUGGCAAUCGCAGAUUAUCUUUUACGAUUAGUGAUUGCUGGGGCGCGAUGGUAUUACGAGUAUGAUUC
---------....((...(((((...(((((....((((..(((.((((((((((.((((.........)))).)))))))))))))..)))).))))).))))).)).... ( -29.80)
>DroSim_CAF1 11736 102 + 1
---------ACCACGGUGAUUCGAUGAUUAUAUUAAUCGAUA-CGUGGCAAUCGCAGAUUAUCUUUUACGAUUAGUGAUUGCUGCGGCGCGAUGGUAUUACGAGUAUGAUUC
---------((((..(((..(((((..........)))))..-((..((((((((.((((.........)))).))))))))..)).)))..))))................ ( -29.30)
>DroEre_CAF1 11031 86 + 1
---------ACCGCGCUGAU----------UAUUAAUCGAUA-CGUGGCAAUCAGAGAUUAUCUUUUACGAUUAGUGACGGCUGAGGCGCGAUUGUAUUACGA------UUC
---------..(((((((((----------.....)))....-(((.((((((((((.....))))...)))).)).))).....))))))((((.....)))------).. ( -19.80)
>DroYak_CAF1 12869 95 + 1
GCAGAUUAUAUCGCGGUGAU----------UAUUAAUCGAUA-CAUGGCAAUCACAGAUUAUCGUUUACGAUUAGUGAUUGCUGCGGCGCGUUAGUAUUACGC------AUC
..........((((((..((----------(((((((((.((-.(((..((((...))))..))).)))))))))))))..)))))).((((.......))))------... ( -33.50)
>consensus
_________ACCACGGUGAUUCGAUGA_UAUAUUAAUCGAUA_CGUGGCAAUCGCAGAUUAUCUUUUACGAUUAGUGAUUGCUGCGGCGCGAUGGUAUUACGAGUAUGAUUC
...................................((((....(..(((((((((.((((.........)))).)))))))))..)...))))................... (-13.98 = -14.54 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:45 2006