Locus 5181

Sequence ID X_DroMel_CAF1
Location 13,524,830 – 13,524,946
Length 116
Max. P 0.973598
window8403

overview

Window 3

Location 13,524,830 – 13,524,946
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 87.26
Mean single sequence MFE -20.99
Consensus MFE -18.41
Energy contribution -18.61
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.88
SVM decision value 1.71
SVM RNA-class probability 0.973598
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13524830 116 - 22224390
ACUGGCAUAUUUAUCGGAUUUGCCACCCCCCUCCCC-CCAAAUUCCCACAUUCAAACCAUCCAUUUCGCUGCCACUGCUGAUUAUGUGCCAUUAAAAUUGGCUGCCAAUUGGCAAAA
..((((((((..((((((((((..............-.)))))))......................((.......)).))).))))))))...........((((....))))... ( -21.56)
>DroSec_CAF1 7828 105 - 1
ACUGGCAUAUUUAUCGGAUU------------CCCCUCCACAUUCCCACAUUCAAACUAUCCAUUUCGCUGCCACUGCUGAUUAUGUGCCAUUAAAAUUGGCUGCCAAUUGGCAAAA
..((((((((..((((((..------------....)))............................((.......)).))).))))))))...........((((....))))... ( -21.50)
>DroSim_CAF1 8194 104 - 1
ACUGGCAUAUUUAUCCGAUU------------CCCC-CCACAUUCCCACAUUCAAACUAUCCAUUUCGCUGCCACUGCUGAUUAUGUGCCAUUAAAAUUGGCUGCCAAUUGGCAAAA
..(((((.........(((.------------....-.....................)))........))))).(((..(((....((((.......))))....)))..)))... ( -16.60)
>DroEre_CAF1 7804 95 - 1
ACUGGCAUAUUUAUCGGAUU------------CCC----------CCACAUACAAACCAUCCGUUUGGCUGCCACUGCUGAUUAUGUGCCAUUAAAAUUGGCUGCCAAUUGGCAAAA
..(((((........((...------------...----------)).....(((((.....)))))..))))).(((..(((....((((.......))))....)))..)))... ( -24.30)
>DroYak_CAF1 9833 95 - 1
ACUGGCAUAUUCAUCGGAUU------------CCC----------CCACAUUCAAACCAUCCAUUUCGCUGCCAUUGCUGAUUAUGUGCCAUUAAAAUUGGCUGCCAAUUGGCAAAA
..(((((........((((.------------...----------.............)))).......)))))((((..(((....((((.......))))....)))..)))).. ( -20.99)
>consensus
ACUGGCAUAUUUAUCGGAUU____________CCCC_CCA_AUUCCCACAUUCAAACCAUCCAUUUCGCUGCCACUGCUGAUUAUGUGCCAUUAAAAUUGGCUGCCAAUUGGCAAAA
..((((((((..(((((((.......................................)))).....((.......)).))).))))))))...........((((....))))... (-18.41 = -18.61 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:44 2006