Locus 5180

Sequence ID X_DroMel_CAF1
Location 13,523,880 – 13,523,976
Length 96
Max. P 0.998858
window8402

overview

Window 2

Location 13,523,880 – 13,523,976
Length 96
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -31.92
Consensus MFE -19.06
Energy contribution -20.86
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -3.65
Structure conservation index 0.60
SVM decision value 3.26
SVM RNA-class probability 0.998858
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13523880 96 - 22224390
CUCCAGUUUGGAUUUGAAUUUGAAUU------UGAGUUUUAGCUCGACUUCGGGCUUCGGUUUAGGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU
((((.((((((....(((((((((.(------(((((....)))))).)))))).)))((((.(.(((((....))))).).)))).)))))).)))).... ( -33.60)
>DroSec_CAF1 6924 83 - 1
CUCCAGUUUGGAUUUGAAUU------------UGAGUUUUAGCUCGACUU-------CGGUUGAGGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU
((((.((((((....(((.(------------(((((....)))))).))-------)((((((.(((((....))))).)))))).)))))).)))).... ( -36.50)
>DroSim_CAF1 7292 95 - 1
CUCCAGUUUGGAUUUGAAUUUGAAUUUGAGUUUGAGUUUUAGCUCGACUU-------CGGUUGAGGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU
((((.((((((..........(((.(((((((........))))))).))-------)((((((.(((((....))))).)))))).)))))).)))).... ( -37.30)
>DroEre_CAF1 6985 88 - 1
CUCCAGUUUGCAUUUGAAUU------------UGAGUUUUAGCUCGACUUUGGGUUUCGGU--UGUGGAGAAGGUUCCUGUCAGCCAUCAAGCGGGAGAAAU
((((.(((((.(((..((.(------------(((((....)))))).))..)))...(((--((.((((....))))...)))))..))))).)))).... ( -29.30)
>DroYak_CAF1 8462 72 - 1
CUCCAGUUUGCAUUUGAAUU------------UGAGUUUCGGCU-----A-------------UGGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU
((((.(((((.....(((..------------.....)))((((-----(-------------((((((.....))))))).))))..))))).)))).... ( -22.90)
>consensus
CUCCAGUUUGGAUUUGAAUU____________UGAGUUUUAGCUCGACUU_______CGGUU_AGGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU
((((.(((((.......................((((....)))).............((((.(.(((((....))))).).))))..))))).)))).... (-19.06 = -20.86 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:43 2006