Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,502,338 – 1,502,436 |
Length | 98 |
Max. P | 0.798241 |
Location | 1,502,338 – 1,502,436 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 98.16 |
Mean single sequence MFE | -13.14 |
Consensus MFE | -11.26 |
Energy contribution | -11.46 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.86 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1502338 98 + 22224390 CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGAAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA .((((((((...(((((((...............((((..........))))..(((....))).....)))))))...)))).)))).......... ( -12.70) >DroSec_CAF1 27055 98 + 1 CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGUAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA .((((((((...((((((................((((..........))))..((((........))))))))))...)))).)))).......... ( -12.00) >DroSim_CAF1 11580 98 + 1 CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGUAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA .((((((((...((((((................((((..........))))..((((........))))))))))...)))).)))).......... ( -12.00) >DroEre_CAF1 31403 98 + 1 CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGAAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA .((((((((...(((((((...............((((..........))))..(((....))).....)))))))...)))).)))).......... ( -12.70) >DroYak_CAF1 2913 98 + 1 CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAUAAAUCACAAUCAAAAUCGAAAUCGAGAGCGAGCGAAAAAAUGAACGCAUACAAAUUGGA .((((((((...(((((((...(((.........(((((........)))))..(((....))))))..)))))))...)))).)))).......... ( -16.30) >consensus CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGAAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA .((((((((...((((((................((((..........))))..((((........))))))))))...)))).)))).......... (-11.26 = -11.46 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:32 2006