Locus 5178

Sequence ID X_DroMel_CAF1
Location 13,519,058 – 13,519,176
Length 118
Max. P 0.768772
window8399

overview

Window 9

Location 13,519,058 – 13,519,176
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.60
Mean single sequence MFE -27.44
Consensus MFE -16.54
Energy contribution -16.70
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -1.74
Structure conservation index 0.60
SVM decision value 0.52
SVM RNA-class probability 0.768772
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13519058 118 + 22224390
--UUUAUACGAUUAUAUGUGUGGAUGAAGGAUCGCCUAAUUGAUACUUUAAUAAGAUUGUUGUACAAAUUGUUUGGACAGGCGGACGAACUGUUUGUCCAGUUAGUUUAGCUUGAGCAUU
--..(((((((((.(((((((.(((..(((....))).))).))))....))).))))).)))).((((((.((((((((((((.....)))))))))))).)))))).((....))... ( -30.30)
>DroSec_CAF1 2130 118 + 1
--UUUAUCCGAUUAAAUGUAAGGAUGAAGGAUCGCCUAGUUGAUUCUUUAAUAAGAUUGUUGUACAAAUAGUUUGGACAGGCGGACGAACUGUUUGUCCAGGUAGUUUAGCUUGAGCAUU
--(((((((............)))))))((((..(((.(((((....))))).((((((((.....))))))))((((((((((.....)))))))))))))..)))).((....))... ( -31.70)
>DroSim_CAF1 2030 118 + 1
--UUUAUCCGAUUAUAUGUAAGGAUGAAGGAUCGCCUAGUUGAUGAUUUAAUUAGAUUGUUGUACAAAUAGUUUGGACAGGCGGACGAACUGUUUGUCCAGUUAGUUUAGCUUGAGCAUU
--(((((((............))))))).....(((.((((((....((((((((((((((.....))))))))((((((((((.....)))))))))))))))).)))))).).))... ( -32.20)
>DroEre_CAF1 2140 94 + 1
GAUUUAUCC------------------------GAAUACAUGUUUCUUUAACAAGAUUGUUGUACAAAUUCUUUGGACAGGCGGACGAGCUGUUUGUCCAGUU--UAUAGCUUGAGCGUU
.........------------------------...((((....((((....))))....)))).........(((((((((((.....)))))))))))(((--((.....)))))... ( -21.70)
>DroYak_CAF1 2049 94 + 1
GAUUUAUCC------------------------AAAUGAAUUCUUUUUGAACAAGAUUGUUGUACAAAUUGUUUGGACAGGCGAACGAACUGUUUGUCCAGUU--UUUAGCUUGAGCAUA
......(((------------------------(((..(......((((.((((.....)))).)))))..))))))(((((....((((((......)))))--)...)))))...... ( -21.30)
>consensus
__UUUAUCCGAUUA_AUGU__GGAUGAAGGAUCGCCUAAUUGAUUCUUUAAUAAGAUUGUUGUACAAAUUGUUUGGACAGGCGGACGAACUGUUUGUCCAGUUAGUUUAGCUUGAGCAUU
...................................................((((.(((.....))).....((((((((((((.....)))))))))))).........))))...... (-16.54 = -16.70 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:40 2006