Locus 5177

Sequence ID X_DroMel_CAF1
Location 13,512,730 – 13,512,831
Length 101
Max. P 0.960181
window8398

overview

Window 8

Location 13,512,730 – 13,512,831
Length 101
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 72.00
Mean single sequence MFE -25.13
Consensus MFE -17.90
Energy contribution -17.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.71
SVM decision value 1.51
SVM RNA-class probability 0.960181
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13512730 101 + 22224390
UA-----------UUUCAACUGCUGGGGAAAUGCUAGAGCCCGAAACAGAACCCAGGAUAUGUUUAACUCACAAUGUGUAUAUUGAAUCUCUCCGGGAGGCAGGCCUCCCAC
..-----------...........(((((.......(((....(((((...(....)...)))))..))).(((((....)))))....)))))((((((....)))))).. ( -27.00)
>DroSec_CAF1 1117 112 + 1
GAUAGAGACUUUCUUUCAACGACUGGGGAAAUGCUAGAGCCCAAACCUGAAUCCAGGAUAUGUUUAACUCACAAUAUGUAUAUUGAAUCUCUCCGGGAGGCAGGCCUCCCAC
....((((..(((..........((((............))))..((((....))))(((((((........))))))).....)))..)))).((((((....)))))).. ( -29.90)
>DroEre_CAF1 1290 81 + 1
-------------------------------UACCAUAACCAGAAUCCCAAUCAAGGAUAUGUUUAACUCACAAUGUGUAUAUUGAAUCUCUCCGGGAGGCAGGCCUCCCAC
-------------------------------........................(((.(.((((((..(((...)))....)))))).).)))((((((....)))))).. ( -18.50)
>consensus
_A___________UUUCAAC__CUGGGGAAAUGCUAGAGCCCGAAACAGAAUCCAGGAUAUGUUUAACUCACAAUGUGUAUAUUGAAUCUCUCCGGGAGGCAGGCCUCCCAC
.......................................................(((.(.((((((...((.....))...)))))).).)))((((((....)))))).. (-17.90 = -17.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:39 2006