Locus 5176

Sequence ID X_DroMel_CAF1
Location 13,511,366 – 13,511,486
Length 120
Max. P 0.645973
window8397

overview

Window 7

Location 13,511,366 – 13,511,486
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.06
Mean single sequence MFE -42.37
Consensus MFE -20.97
Energy contribution -21.16
Covariance contribution 0.20
Combinations/Pair 1.32
Mean z-score -1.85
Structure conservation index 0.49
SVM decision value 0.23
SVM RNA-class probability 0.645973
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13511366 120 + 22224390
UACACUGUAUGCCCAUCCGGUGGAGCAUGUGUUGGCCAAUCUGUUGCCGGUGGCCACGUCCAUUGCCAUCCUGGGCACCCAUGUCGCCCUGGCCUACGUGAUCUUUGCCCUGGCCAUCAU
.((((...((((((((...)))).))))))))((((((((((((.(((((.(((.((((....((((......))))...)))).))))))))..))).)))........)))))).... ( -42.40)
>DroPse_CAF1 1318 120 + 1
CACGCUGUAUGCCCACCCCGUGGAGCAUGUACUGGCCAACCUUCUCCCGGUGGCACUCUCAAUAGCGCUGCUGGGCACCCACGUCGCCUUGGCCUGGAUGAUCUUUGCCUUGGCCAUUAU
.......(((((((((...)))).)))))...(((((((......(((((..((.((......)).))..)))))((.(((.(((.....))).))).)).........))))))).... ( -41.70)
>DroWil_CAF1 527 120 + 1
UACAUUGUAUGCCCAUCCUGUGGAACAUAUGUUGGCCAAUUUAAUGCCAGUUGGCCUAUCCAUAGCCCUGUUGGGCACUCAUGUAGCUUUGGCCUGGAUCAUCUUUGGCUUGGCCAUACU
(((((.(..((((((..(((((((((....)).((((((((.......))))))))..)))))))......))))))..))))))....(((((.((.(((....))))).))))).... ( -42.50)
>DroYak_CAF1 516 120 + 1
CACGCUGUACGCCCAUCCGGUGGAGCAUGUGCUGGCCAAUCUGCUGCCGGUGGCCACCUCCAUUGCCAUCCUGGGCACCCACGUGGCACUGGCCUAUGUCAUUUUCGGCCUGGCCAUUAU
((((.(((.((((.....))))..))))))).((((((....((((..((((((.....(((.((((((..(((....))).)))))).))).....))))))..)))).)))))).... ( -44.60)
>DroMoj_CAF1 1715 120 + 1
GACUCUCUAUGCCCACCCCAUCGAGCACGUGCUAGCUAACCUGCUCCCAGUGGGCAUAUCCGUCUCUCUGCUGGGCACCCACGUCGUCGUUGCCUGGGGCAUUAUAUCCCUGGCGGUCAU
(((....(((((((((......(((((.((........)).)))))...)))))))))...)))...((((((((((...(((....))))))))((((........))))))))).... ( -41.30)
>DroPer_CAF1 5814 120 + 1
CACGCUGUAUGCCCACCCCGUGGAGCAUGUACUGGCCAACCUUCUCCCGGUGGCACUCUCAAUAGCGCUGCUGGGCACCCACGUCGCCUUGGCCUGGAUGAUCUUUGCCUUGGCCAUUAU
.......(((((((((...)))).)))))...(((((((......(((((..((.((......)).))..)))))((.(((.(((.....))).))).)).........))))))).... ( -41.70)
>consensus
CACGCUGUAUGCCCACCCCGUGGAGCAUGUGCUGGCCAACCUGCUCCCGGUGGCCAUCUCCAUAGCCCUGCUGGGCACCCACGUCGCCUUGGCCUGGAUCAUCUUUGCCCUGGCCAUUAU
((((.((..((((((...(((.((.....((((((...........))))))......))....)))....))))))..))))))....(((((.................))))).... (-20.97 = -21.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:38 2006