| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,506,892 – 13,506,991 |
| Length | 99 |
| Max. P | 0.771387 |
| Location | 13,506,892 – 13,506,991 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -51.65 |
| Consensus MFE | -35.12 |
| Energy contribution | -36.27 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13506892 99 - 22224390 CGUGAGAUGCAUGCAGCCGCGUGCUGUAGAGCGCUGCUCC------GCCCGGUGCACUGCCCAGUGCCACGGUGGCAUAAUGCUGGGCCUGCGUCUGGGCGGGCA--------------- (((.....((((((....))))))......)))..((.((------((((((((((..((((((((((.....))).....))))))).)))).)))))))))).--------------- ( -52.40) >DroPse_CAF1 1582 120 - 1 CGUGUGAGCCAUGCAGCCGCGUACUGUACAUGGCCGCUCCACCACCGCCAGUGCCACUGCCCAGGGCCACCGUAGCAUAAUGUUGGGCCUGGGCUUGGGCCUGCGCUUGAGCAUGUGCCC .......(((((((.((((.(((...))).))))............(((((.(((...(((((((.(((.(((......))).))).)))))))...)))))).))....))))).)).. ( -51.60) >DroSec_CAF1 1634 99 - 1 CGUGGGAGGCAUGCAGCCGCGUGCUGUAGAGCGCUGCUCC------GCCUGGAGCACUGCCCAGUGCCACGGUGGCAUAAUGCUGGGCCUGCGUCUGGGCGGGCA--------------- (((....(((((((....))))))).....)))..((.((------(((..(((((..((((((((((.....))).....))))))).))).))..))))))).--------------- ( -52.40) >DroSim_CAF1 2406 99 - 1 CGUGGGAGGCAUGCAGCCGCGUGCUGUAGAGCGCUGCUCC------GCCUGGAGCACUGCCCAGUGCCACGGUGGCAUAGUGCUGGGCCUGCGUCUGGGCGGGCA--------------- (((....(((((((....))))))).....)))..((.((------(((..(((((..((((((((((.....))).....))))))).))).))..))))))).--------------- ( -52.40) >DroYak_CAF1 1692 99 - 1 CGUGGGAGGCGUGCAGCCGUGUGCUGUAGAGCGCUGCUCC------GCCCGGAGCACUGCCCAGUGCCACGGUGGCAUAGUGCUGGGCCUGCGUCUGGGCGGGCA--------------- .......((((((((((.....)))))...)))))((.((------((((((((((..((((((((((.....))).....))))))).))).))))))))))).--------------- ( -54.10) >DroAna_CAF1 2002 96 - 1 CAUGGGAGGCAUGCAACCGAGUGCUGUACAAGGCUCCCCC------GCCCGGGGACGUGCCCAGGGCCACGGUGGCAUAGUGCUGGGCC---GCCUGGGCGGGCA--------------- ...((((((((.(((......))))))......)))))((------(((((((..((.((((((.(((.....)))......)))))))---))))))))))...--------------- ( -47.00) >consensus CGUGGGAGGCAUGCAGCCGCGUGCUGUAGAGCGCUGCUCC______GCCCGGAGCACUGCCCAGUGCCACGGUGGCAUAAUGCUGGGCCUGCGUCUGGGCGGGCA_______________ ...(((.(((.((((((.....))))))....))).))).......((((((((((..((((((((((.....))).....))))))).))).))))))).................... (-35.12 = -36.27 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:37 2006