Locus 5174

Sequence ID X_DroMel_CAF1
Location 13,506,659 – 13,506,773
Length 114
Max. P 0.954062
window8395

overview

Window 5

Location 13,506,659 – 13,506,773
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.37
Mean single sequence MFE -40.28
Consensus MFE -36.55
Energy contribution -36.24
Covariance contribution -0.31
Combinations/Pair 1.11
Mean z-score -2.00
Structure conservation index 0.91
SVM decision value 1.44
SVM RNA-class probability 0.954062
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13506659 114 - 22224390
GAUCUCAGAUGGCCAUUCCCGUGUCCAUGGGCAUUUGCAU------UGGCAUUGACAUUAGCAUUGGCAUGCGCAUGGGCAUGGGCCACAUAAUGAUGCAGUCCUAACUCCGGACUGGCU
..........((((...((((((((((((.(((..(((..------..((..........))....)))))).))))))))))))..............(((((.......))))))))) ( -43.40)
>DroSec_CAF1 1410 108 - 1
GAUCUCAAAUGGCCAUUCCCGUGUCCAUGGGCAUUUGCA------------UUGACAUUAGCAUUGGCAUGCGCAUGGGCAUGGGCCACAUAAUGAUGCAGUCCCAACUCCGGACUGGCU
..........((((...((((((((((((.(((..(((.------------.((.(....)))...)))))).))))))))))))..............(((((.......))))))))) ( -41.00)
>DroSim_CAF1 2182 108 - 1
GAUCUCAAAUGGCCAUUCCCGUGUCCAUGGGCAUUUGCA------------UUGACAUUAGCAUUGGCAUGCGCAUGGGCAUGGGCCACAUAAUGAUGCAGUCCCAACUCCGGACUGGCU
..........((((...((((((((((((.(((..(((.------------.((.(....)))...)))))).))))))))))))..............(((((.......))))))))) ( -41.00)
>DroYak_CAF1 1456 120 - 1
GAUCUCAGAUGGCUAUUCCCAUGUCCGUGGGCAUUCGCAUUCACAUUCGCAUUGGCAUUGACAUUGGCAUGCGCAUGGGCAUGGGCCACAUAAUGAUGCAGACCCAACUCCGGACUGGCU
.(((....(((......((((((((((((.((((.(.((....((...((....))..))....))).)))).))))))))))))...)))...))).(((.((.......)).)))... ( -35.70)
>consensus
GAUCUCAAAUGGCCAUUCCCGUGUCCAUGGGCAUUUGCA____________UUGACAUUAGCAUUGGCAUGCGCAUGGGCAUGGGCCACAUAAUGAUGCAGUCCCAACUCCGGACUGGCU
..........((((...((((((((((((.((((..((............................)))))).))))))))))))..............(((((.......))))))))) (-36.55 = -36.24 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:36 2006