| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,506,155 – 13,506,248 |
| Length | 93 |
| Max. P | 0.615874 |
| Location | 13,506,155 – 13,506,248 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 81.48 |
| Mean single sequence MFE | -32.05 |
| Consensus MFE | -23.84 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13506155 93 + 22224390 --CUAU---AUUCU-UAUUGCAGGUGCGUGGUUGUGGCCAUCAUCUUGGCCAUCCUGUGUGCCUACUCACUAUGGAAGAAGCGGCGGACACUAUGCGGC --....---.((((-(.....(((..((..(..(((((((......))))))).)..))..))).((......)))))))((.(((.......))).)) ( -29.60) >DroVir_CAF1 721 98 + 1 UUAUAUGUUAUUCCCCACU-UAGGUGCGUCGUGGUGGCCGUCAUUUUAGCCAUACUUUGUGCCUACUCGUUGUGGAAAAAGCGACGUACACUCUGCGGC ..............((.(.-.(((((((((((.(((((.(......).))))).........((((.....)))).....))))))))).))..).)). ( -27.10) >DroSec_CAF1 906 93 + 1 --CUAU---AUUCU-CCCUGCAGGUGCGUGGUUGUGGCCAUCAUCUUGGCCAUCCUGUGUGCCUACUCACUAUGGAAGAAGCGACGGACACUUUGCGGC --....---.....-..((((((((((((.(((.((((((......))))))(((.(((........)))...)))...))).)))..))).)))))). ( -30.10) >DroEre_CAF1 932 91 + 1 ----AU---ACUCU-CCUUGCAGGUGCGUGGUUGUGGCCAUCAUUUUGGCCAUCUUGUGUGCCUACUCGCUAUGGAAGAAACGGAGGACACUGUGCGGC ----..---..(((-((..(((((..((..(..(((((((......))))))).)..))..)))....))...)).))).((((......))))..... ( -28.90) >DroYak_CAF1 957 91 + 1 ----AC---AUUCU-CAUUGCAGGUGCGUGGUGGUGGCCAUCAUCUUGGCCAUCUUGUGUGCCUACUCGCUAUGGAAGAAGCGGAGGACACUGUGCGGC ----..---.(((.-(((.(((((..((..(.((((((((......)))))))))..))..)))....)).))))))...(((.((....)).)))... ( -36.10) >DroMoj_CAF1 834 99 + 1 CUCUCUUUUGUCUUCCUCUGCAGGUGCGUCGUGGUGGCCGUCAUUUUGGCCAUCCUCUGUGCCUACUCGCUAUGGAAGAAGCGUCGCACACUGUGCGGC ..........((((((...(((((..((..(.((((((((......)))))))))..))..)))....))...))))))...(((((((...))))))) ( -40.50) >consensus __CUAU___AUUCU_CACUGCAGGUGCGUGGUGGUGGCCAUCAUCUUGGCCAUCCUGUGUGCCUACUCGCUAUGGAAGAAGCGGCGGACACUGUGCGGC .................(((((((..((..(..(((((((......))))))).)..))..)))..(((((........)))))..........)))). (-23.84 = -23.73 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:35 2006