Locus 5172

Sequence ID X_DroMel_CAF1
Location 13,489,437 – 13,489,546
Length 109
Max. P 0.830522
window8393

overview

Window 3

Location 13,489,437 – 13,489,546
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.75
Mean single sequence MFE -27.45
Consensus MFE -20.87
Energy contribution -20.82
Covariance contribution -0.05
Combinations/Pair 1.32
Mean z-score -1.19
Structure conservation index 0.76
SVM decision value 0.71
SVM RNA-class probability 0.830522
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13489437 109 - 22224390
AUAAUGAAAAGCUCGAGGCCGCCAUCAACGGGACAUGAGUUUAAGGAUUUCUUGCAUAUUUCCGGCACGCCAGGUGGUUGAGCUAAAAGGCACGAACAUCAAUUUUAUU
..(((((((((((((..((((((.......(((.(((.((...(((....))))).))).)))((....)).)))))))))))).........(.....)..))))))) ( -25.00)
>DroVir_CAF1 7794 102 - 1
AUGAUGAACAGCUCCAGACCGCCAUCGACGGGGCAAGAGUUAAGUGAUUUUUUACAGAUCUCUGGUACGCCUGGUGGCUGAGCUAUGAAAUACGAAAAA------AAC-
.........(((((.((.((((((..(.((..((.((((....((((....))))....)))).)).))).)))))))))))))...............------...- ( -27.60)
>DroGri_CAF1 6751 102 - 1
AUGAUGAACAACUCCAAGCCGCCAUCAACGGGACAAGAGUUCAGUGAUUUCUUGCAAAUCUCUGGAACACCGGGUGGCUGAGCUGUAAAAUAUUGAAAU------AAU-
.......(((.(((..(((((((.....(((........(((((.(((((.....))))).)))))...))))))))))))).))).............------...- ( -26.10)
>DroEre_CAF1 5820 108 - 1
AUAAUGAACAGCUCGAGGCCGCCAUCAACGGGACAGGAGUUUAAUGAUUUCUUGCAUAUUUCCGGCACGCCAGGUGGUUGAGCUAA-AGGCACGAAUAUAAAAUUAAUU
.........((((((..((((((......((((((((((.........)))))).....))))((....)).))))))))))))..-...................... ( -26.60)
>DroYak_CAF1 6175 108 - 1
AUAAUGAAUAGCUCGAGGCCGCCAUCAACGGGACAGGAGUUUAAUGAUUUCUUGCAUAUUUCCGGCACGCCAGGUGGUUGAGCUAA-AGGCACGAACAUCAAAUUAAUA
........(((((((..((((((......((((((((((.........)))))).....))))((....)).))))))))))))).-...................... ( -28.00)
>DroMoj_CAF1 8888 102 - 1
AUUAUGAACAGCUCCAGACCACCAUCGACGGGACAAGAGUUUAGCGAUUUUUUACAGAUCUCCGGCACACCGGGUGGCUGAGCUGUAAAAUGAAAUAAA------AUU-
.((((..(((((((.((.(((((((((...((((....))))..))))..............(((....)))))))))))))))))...))))......------...- ( -31.40)
>consensus
AUAAUGAACAGCUCCAGGCCGCCAUCAACGGGACAAGAGUUUAAUGAUUUCUUGCAUAUCUCCGGCACGCCAGGUGGCUGAGCUAAAAAACACGAAAAU______AAU_
.........(((((..(((((((((((...((((....))))..))))...............((....)).))))))))))))......................... (-20.87 = -20.82 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:34 2006