Locus 5170

Sequence ID X_DroMel_CAF1
Location 13,486,437 – 13,486,527
Length 90
Max. P 0.939223
window8390

overview

Window 0

Location 13,486,437 – 13,486,527
Length 90
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 94.05
Mean single sequence MFE -22.88
Consensus MFE -22.14
Energy contribution -22.18
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.34
Structure conservation index 0.97
SVM decision value 1.30
SVM RNA-class probability 0.939223
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13486437 90 + 22224390
UUCUAUUGA--GCUGAGCAUCGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCUAUU
.....((((--.(..(((..(((((...(((((.....(((((.....)))))..)))))...)))))..)).)..)...))))........ ( -20.50)
>DroSec_CAF1 18905 90 + 1
UUCUAUUGA--GCUGAGUGUCGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCAAUU
.....((((--.(..((((((((((...(((((.....(((((.....)))))..)))))...))))))))).)..)...))))........ ( -24.40)
>DroSim_CAF1 11537 90 + 1
UUCUAUUGA--GCUGAGUGUCGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCUAUU
.....((((--.(..((((((((((...(((((.....(((((.....)))))..)))))...))))))))).)..)...))))........ ( -24.40)
>DroEre_CAF1 2877 89 + 1
UUCUAUUGA--GCUGAGUGUUGAUUCGGGUUCAAUGAAUGCAUUCGA-AUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCUAUU
(((.(((((--(((((((....)))).)))))))))))....(((((-((.((((((..((.....)).)).))))..)))))))....... ( -21.50)
>DroYak_CAF1 3142 92 + 1
UUCUAUUCAGUGUUGAGUGUUGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCUUUGGAAUUCGAAAUCUAUU
(((.((((......((((((..(((...(((((.....(((((.....)))))..)))))...)))..))))))..))))..)))....... ( -23.60)
>consensus
UUCUAUUGA__GCUGAGUGUCGAUUUGGGUUCGUUGAAUGCAUUCGAAAUGCAAUCGGACAUUGAUUGGCGCAUUGGAAUUCGAAAUCUAUU
.....((((...(..((((((((((...(((((.....(((((.....)))))..)))))...))))))))).)..)...))))........ (-22.14 = -22.18 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:32 2006