Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,498,980 – 1,499,075 |
Length | 95 |
Max. P | 0.988672 |
Location | 1,498,980 – 1,499,075 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 88.38 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -21.63 |
Energy contribution | -21.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.16 |
Structure conservation index | 0.86 |
SVM decision value | 2.13 |
SVM RNA-class probability | 0.988672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1498980 95 + 22224390 AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUUUUCCCC----ACCUUGUCGUCAGGUAAACUGACGACAAAUGCUA---CAACUACUACAACA .....(((((...(((((....))...(((....)))........))----)..((((((((((.....))))))))))......---........))))). ( -24.90) >DroGri_CAF1 15416 93 + 1 -ACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUCUUCCCU----AA-UUGUCGUCAGGUCAACUGACGACAAAUGCUA---CAACUUCUACAACA -....(((((....((......(((..(((....)))..........----..-((((((((((.....)))))))))).)))..---...))...))))). ( -24.00) >DroSec_CAF1 23769 92 + 1 AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUUUUCCCC----ACCUUGUCGUCAGGUAAACUGACGACAAAUGCUA---CAACU---ACAACA .....(((((..((((((.........(((....)))..........----...((((((((((.....))))))))))..))).---)))..---))))). ( -26.20) >DroWil_CAF1 14503 92 + 1 AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUCUUCCCC----AACUUGUCGUCAGGUAAACUGACGACAAAUGCAA---CAACUACUAUA--- .....(((((..((((((....))...(((....)))........))----)).((((((((((.....))))))))))..))))---)..........--- ( -26.00) >DroMoj_CAF1 15187 92 + 1 -AAUCGUUGUACUUGGGCUAAUGCGACGUUUUCUGACUUUCUUUCCU----ACCUUGUCGUCAGGUCAACUGACGACAAAUGCUA---CAACUUCUACAA-- -....((((((...((((....))...(((....)))..........----.))((((((((((.....))))))))))....))---))))........-- ( -25.10) >DroAna_CAF1 34032 99 + 1 AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUCUUCCCCCAAAAAAUUGUCGUCAGGUAAACUGACGACAAAUGCUUCUUCAACU---UCAACA .....((((...((((((....))...(((....))).........))))....((((((((((.....))))))))))..............---.)))). ( -24.90) >consensus AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUCUUCCCC____AACUUGUCGUCAGGUAAACUGACGACAAAUGCUA___CAACU_CUACAACA .....((((.....((((....))...(((....))).......))........((((((((((.....)))))))))).........)))).......... (-21.63 = -21.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:31 2006