Locus 5169

Sequence ID X_DroMel_CAF1
Location 13,483,361 – 13,483,472
Length 111
Max. P 0.950267
window8389

overview

Window 9

Location 13,483,361 – 13,483,472
Length 111
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 77.03
Mean single sequence MFE -27.85
Consensus MFE -21.47
Energy contribution -21.55
Covariance contribution 0.08
Combinations/Pair 1.25
Mean z-score -1.72
Structure conservation index 0.77
SVM decision value 1.40
SVM RNA-class probability 0.950267
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13483361 111 + 22224390
AUCGAAAAGGAUUUCGCAUACCAUCGAAAAGACAGCCGGGUAAGGGAUUGCCCGGCAAGUUGCACACCAUAACCAGGGUGAGUCUUAAUUAAUAAUUAAACUAGCAUACUU-----
.((((...((..........)).)))).......(((((((((....)))))))))(((((((.((((........))))(((.(((((.....)))))))).))).))))----- ( -30.60)
>DroGri_CAF1 51 100 + 1
AUCGCAAAGGCUUUCGGAUACCAUCGAAGAGACAGACGGGCAAGGGAUUGCCCGGUAAAUUGCACACCAUUGCCAGGGUAAGCAC--ACAA-CAGUUG-AGCAA------------
...((......((((((......)))))).(((...(((((((....)))))))......(((..(((........)))..))).--....-..))).-.))..------------ ( -24.30)
>DroSec_CAF1 16048 115 + 1
AUCGAAAAGGAUUUCGCAUACCAUCGAAAAGACAGCCGGGUAAGGGAUUGCCCGGCAAGCUGCACACCAUAUCCAGGGUGAGUCUUAAUUACUAAUUA-ACUAGCAUGCUAAUAUU
...((((....))))((((.........(((((.(((((((((....)))))))))........((((........)))).))))).....(((....-..))).))))....... ( -32.20)
>DroEre_CAF1 36 107 + 1
AUCGAAAAGGAUUUCGCAUACCAUCGAAAAGACAGCCGGGCAAGGGAUUGCCCGGUAAGCUGCACACCAUAACCAGGGUGAGU--UAAUCAAUAAUUA-ACCAGUU-AAAU-----
.((((...((..........)).)))).......(((((((((....))))))))).(((((..((((........)))).((--((((.....))))-)))))))-....----- ( -30.40)
>DroYak_CAF1 151 107 + 1
AUCGCAAAGGAUUUCGCAUACCAUCGAAAAGACAACCGGGUAAGGGAUUGCCCGGCAAGCUGCACACCAUAACCAGGGUGAGU--CAAUCAUUAAUUA-AGCAAAA-ACCU-----
...((......(((((........))))).(((..((((((((....)))))))).........((((........)))).))--)............-.))....-....----- ( -26.70)
>DroMoj_CAF1 51 89 + 1
AUCGCAAAGGCUUUCGCAUACCAUCGAAAAGACAGCCGGGCAAGGGACUGCCGGGCAAAUUGCACACUAUAGCCAGGGUAAGCAU--AUCA-------------------------
...((....))....((.((((............(((.((((......)))).))).....((........))...)))).))..--....------------------------- ( -22.90)
>consensus
AUCGAAAAGGAUUUCGCAUACCAUCGAAAAGACAGCCGGGCAAGGGAUUGCCCGGCAAGCUGCACACCAUAACCAGGGUGAGU_UUAAUCA_UAAUUA_ACCAG_A_AC_U_____
...........(((((........))))).....(((((((((....))))))))).....((.((((........)))).))................................. (-21.47 = -21.55 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:31 2006