Locus 5168

Sequence ID X_DroMel_CAF1
Location 13,483,136 – 13,483,255
Length 119
Max. P 0.569765
window8388

overview

Window 8

Location 13,483,136 – 13,483,255
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -34.31
Consensus MFE -31.79
Energy contribution -31.13
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.93
SVM decision value 0.07
SVM RNA-class probability 0.569765
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13483136 119 - 22224390
CAUCCAU-UGGAUGAGGCCGAGUCAAAUGGAAGUGAAAACUCCUAUACGCGUACAACGAUCGCCUCAUUCCCAGUUCUACAUAGCGCCUAUGGUACUGGCCUUUAUUGGAGCACAAAAGA
..((((.-.(((((((((.((.....((((.(((....))).))))...((.....)).)))))))))))(((((....(((((...)))))..))))).......)))).......... ( -33.70)
>DroSec_CAF1 15803 120 - 1
CAUCCAUUUGGAUGAGGUCAAGCCAAGUGGAAGUGAAAACUCCUAUACGCGUACAACGAUCGCCUCAUUUCCAGUUCCACAUAGCGCCUAUGGUACUGGGCUUUAUUGGAGCACAAAAGA
(((((....))))).((.....))...(((((((((............(((.........))).)))))))))((((((.((((.(((((......))))).))))))))))........ ( -34.62)
>DroSim_CAF1 8426 120 - 1
CAUCCAUUUGGAUGAGGUCAAGCCAAGUGGAAGUGAAAACUCCUAUACGCGUACAACGAUCGCCUCAUUUCCAGUUCCACAUAGCGCCUAUGGUACUGGGCUUUAUUGGAGCACAAAAGA
(((((....))))).((.....))...(((((((((............(((.........))).)))))))))((((((.((((.(((((......))))).))))))))))........ ( -34.62)
>consensus
CAUCCAUUUGGAUGAGGUCAAGCCAAGUGGAAGUGAAAACUCCUAUACGCGUACAACGAUCGCCUCAUUUCCAGUUCCACAUAGCGCCUAUGGUACUGGGCUUUAUUGGAGCACAAAAGA
..((((...(((((((((........((((.(((....))).))))...((.....))...)))))))))(((((....(((((...)))))..))))).......)))).......... (-31.79 = -31.13 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:30 2006