Locus 5167

Sequence ID X_DroMel_CAF1
Location 13,482,448 – 13,482,546
Length 98
Max. P 0.836092
window8386 window8387

overview

Window 6

Location 13,482,448 – 13,482,546
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 97.95
Mean single sequence MFE -37.13
Consensus MFE -35.80
Energy contribution -36.13
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.96
SVM decision value 0.73
SVM RNA-class probability 0.836092
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13482448 98 + 22224390
AAGGCUGCCAGAGGAGUGUGGACCUGGACCCAAGUGGCGGCUUGUUAAUGGGUUGGGUUCGCUUAGUUUGGUCGGGUUUGUCUGGCUUCCUUAUCAGC
((((..((((((.(((.(((((((..(.((((..((((.....)))).)))))..)))))))...(......)...))).))))))..))))...... ( -36.20)
>DroSec_CAF1 15144 96 + 1
AAGGCUGCCAGAGGAG--UGGACCUGGACCCAAGUGGCGGCUUGUUAAUGGGUUGGGUUCGCUUGGUUUGGUCGGGUUUGUCUGGCUUCCUUAUCAGC
((((..(((((((((.--(.((((.(((((.((((((((((((......))))))...))))))))))))))).).))).))))))..))))...... ( -37.60)
>DroSim_CAF1 7765 96 + 1
AAGGCUGCCAGAGGAG--UGGACCUGGACCCAAGUGGCGGCUUGUUAAUGGGUUGGGUUCGCUUGGUUUGGUCGGGUUUGUCUGGCUUCCUUAUCAGC
((((..(((((((((.--(.((((.(((((.((((((((((((......))))))...))))))))))))))).).))).))))))..))))...... ( -37.60)
>consensus
AAGGCUGCCAGAGGAG__UGGACCUGGACCCAAGUGGCGGCUUGUUAAUGGGUUGGGUUCGCUUGGUUUGGUCGGGUUUGUCUGGCUUCCUUAUCAGC
((((..((((((.((....(((((..(.((((..((((.....)))).)))))..)))))((((((.....)))))))).))))))..))))...... (-35.80 = -36.13 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 13,482,448 – 13,482,546
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 97.95
Mean single sequence MFE -23.26
Consensus MFE -22.81
Energy contribution -22.59
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.98
SVM decision value 0.35
SVM RNA-class probability 0.698513
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13482448 98 - 22224390
GCUGAUAAGGAAGCCAGACAAACCCGACCAAACUAAGCGAACCCAACCCAUUAACAAGCCGCCACUUGGGUCCAGGUCCACACUCCUCUGGCAGCCUU
......((((..((((((.......((((.........(....).(((((................)))))...))))........))))))..)))) ( -22.75)
>DroSec_CAF1 15144 96 - 1
GCUGAUAAGGAAGCCAGACAAACCCGACCAAACCAAGCGAACCCAACCCAUUAACAAGCCGCCACUUGGGUCCAGGUCCA--CUCCUCUGGCAGCCUU
......((((..((((((.......((((...(((((.(.......................).))))).....))))..--....))))))..)))) ( -23.52)
>DroSim_CAF1 7765 96 - 1
GCUGAUAAGGAAGCCAGACAAACCCGACCAAACCAAGCGAACCCAACCCAUUAACAAGCCGCCACUUGGGUCCAGGUCCA--CUCCUCUGGCAGCCUU
......((((..((((((.......((((...(((((.(.......................).))))).....))))..--....))))))..)))) ( -23.52)
>consensus
GCUGAUAAGGAAGCCAGACAAACCCGACCAAACCAAGCGAACCCAACCCAUUAACAAGCCGCCACUUGGGUCCAGGUCCA__CUCCUCUGGCAGCCUU
......((((..((((((.......((((...(((((.(.......................).))))).....))))........))))))..)))) (-22.81 = -22.59 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:29 2006