Locus 5164

Sequence ID X_DroMel_CAF1
Location 13,473,987 – 13,474,115
Length 128
Max. P 0.939984
window8378 window8379

overview

Window 8

Location 13,473,987 – 13,474,081
Length 94
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 95.49
Mean single sequence MFE -35.87
Consensus MFE -30.90
Energy contribution -31.90
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -3.46
Structure conservation index 0.86
SVM decision value 1.28
SVM RNA-class probability 0.939984
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13473987 94 + 22224390
AAAAAAUGGGCGUCAACGCUGCGUAUGCGCAUUAUUAGGUGCGUAUGCGUGAGUGUG--UGUGUGCCUUUAUUUUCAUGUUACCUUCGCAUACACG
........((((....))))(((((((((((((....)))))))))))))..(((((--((((.......((......))......))))))))). ( -33.92)
>DroEre_CAF1 18327 96 + 1
AAAUAAUGGGCGUCAACGCUGCGUAUGCGCAUUAUUAGGUGCGUAUGCGUGAGUGUGCGUGUGUGGCUCUAUUUUCAUGUUACCUUGGCAUACACG
........((((....))))(((((((((((((....)))))))))))))..((((((..(.(((((...........))))))...))))))... ( -34.40)
>DroYak_CAF1 18470 96 + 1
AAAAAAUGGGCGUCAACGCUGCGUAUGCGCAUUAUUAGGUGCGUAUGCGUGAGUGUGUGUGUGUGGCUCUAUUUUCAUGUUACCUUCGCAUACACG
........((((....))))(((((((((((((....)))))))))))))..(((((((((.(((((...........)))))...))))))))). ( -39.30)
>consensus
AAAAAAUGGGCGUCAACGCUGCGUAUGCGCAUUAUUAGGUGCGUAUGCGUGAGUGUG_GUGUGUGGCUCUAUUUUCAUGUUACCUUCGCAUACACG
........((((....))))(((((((((((((....)))))))))))))..(((((.(((.(((((...........)))))...))).))))). (-30.90 = -31.90 +   1.00)

alignment

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secondary structure

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dotplot

Postscript

Window 9

Location 13,474,017 – 13,474,115
Length 98
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 83.28
Mean single sequence MFE -27.33
Consensus MFE -18.89
Energy contribution -19.33
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -2.59
Structure conservation index 0.69
SVM decision value 1.13
SVM RNA-class probability 0.919686
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13474017 98 + 22224390
AUUAUUAGGUGCGUAUGCGUGAGUGUG--UGUGUGCCUUUAUUUUCAUGUUACCUUCGCAUACACGCUCCCACAUUUCCCCCUACCCCGCCUUCUCUGGC
.....((((.(...(((.(.(((((((--((((((.....((......))......))))))))))))).).)))...).))))....(((......))) ( -28.10)
>DroEre_CAF1 18357 92 + 1
AUUAUUAGGUGCGUAUGCGUGAGUGUGCGUGUGUGGCUCUAUUUUCAUGUUACCUUGGCAUACACGCUCUCACUUCACCA-CCCCCCCGCCCC-------
.......((((.(..((.(((((((.(((((((((.(...................).)))))))))...))).))))))-..)...))))..------- ( -28.21)
>DroYak_CAF1 18500 99 + 1
AUUAUUAGGUGCGUAUGCGUGAGUGUGUGUGUGUGGCUCUAUUUUCAUGUUACCUUCGCAUACACGCUCCCACUUUUUCC-CUUCCCCACCUCCUCUGGC
......(((((((....)).(((((((((((((.((................))..)))))))))))))...........-......)))))........ ( -25.69)
>consensus
AUUAUUAGGUGCGUAUGCGUGAGUGUG_GUGUGUGGCUCUAUUUUCAUGUUACCUUCGCAUACACGCUCCCACUUUUCCC_CUACCCCGCCUCCUCUGGC
.......((((((....)))(((((((.(((((((((...........)))))....)))).)))))))...................)))......... (-18.89 = -19.33 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:23 2006