Locus 5162

Sequence ID X_DroMel_CAF1
Location 13,472,457 – 13,472,553
Length 96
Max. P 0.582852
window8376

overview

Window 6

Location 13,472,457 – 13,472,553
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.82
Mean single sequence MFE -20.35
Consensus MFE -12.89
Energy contribution -12.37
Covariance contribution -0.52
Combinations/Pair 1.25
Mean z-score -1.15
Structure conservation index 0.63
SVM decision value 0.10
SVM RNA-class probability 0.582852
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13472457 96 + 22224390
AA---UCGCGUUAAUCGAUACGAAAUAAAUCGUCCGAGAUCGUGAUUAGGCAUUUAACAUGAUUAAGAUAUUGGGCUACGU--------AUGUAUAGA-----GCGAUAUAU--------
.(---((((......(.((((((......))((((((.(((.(((((((........).)))))).))).))))))...))--------)))......-----)))))....-------- ( -21.50)
>DroPse_CAF1 18275 101 + 1
AAUCGUCGCGUUAAUCGAUACGAAAUAAAUCGUAUAAAAUCGUGAUUAACCAUUUAACAUGAUUAAGAUGUUGAGAUCCGUACGA--GUGUGUACACA----C-----GUAU--------
....((((((.......((((((......)))))).....))))))......((((((((.......))))))))....(((((.--(((....))).----)-----))))-------- ( -23.60)
>DroEre_CAF1 16820 78 + 1
AA---UCGCGUUAAUCGAUACGAAAUAAAUCGUCCGAGAUCGUGAUUAGGCAUUUAACAUGAUUUAGAUAUUGGGCUACGU---------------------------------------
..---..((((...(((((((((......)))....((((((((.((((....))))))))))))...))))))...))))--------------------------------------- ( -14.90)
>DroYak_CAF1 17107 105 + 1
AA---UCACGUUAAUCGAUACGAAAUAAAUCGUCCGAGAUCGUGAUUAGGCAUUUAUCAUGAUUAAGAUAUUGGGCUACGUACAUACAUAUGUAUACA----UGCGAUACAU--------
((---(((((....(((..((((......)))).)))...))))))).(((...((((........))))....))).((((.((((....))))...----))))......-------- ( -22.70)
>DroAna_CAF1 20229 109 + 1
AA---CGGCGUUAAUCGAUAUGAAAUAAAUCGUCAGAGAUCGUGAUUAAGUAUUUAACAUGAUUAAGAUAUUGGGCUACAU--------AUAUAUAUCCCCCUCCGAUAUAUCUGAUCGG
..---(((......))).............((((((((((((((.((((....)))))))))))...((((((((......--------.............)))))))).))))).)). ( -17.91)
>DroPer_CAF1 18933 101 + 1
AAUCGUCGCGUUAAUCGAUACGAAAUAAAUCGUAUAAAAUCGUGAUUAACCAUUUAACAUGAUUAAGAUGUUGAGAUCCGUACGA--GUAUGUACACA----C-----GUAU--------
..((((((.((((((((((((((......)))))).......))))))))..((((((((.......))))))))...)).))))--((((((....)----)-----))))-------- ( -21.51)
>consensus
AA___UCGCGUUAAUCGAUACGAAAUAAAUCGUCCGAGAUCGUGAUUAAGCAUUUAACAUGAUUAAGAUAUUGGGCUACGU________AUGUAUACA__________AUAU________
.......((((...(((((((((......))).....(((((((.((((....)))))))))))....))))))...))))....................................... (-12.89 = -12.37 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:20 2006