| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,469,928 – 13,470,027 |
| Length | 99 |
| Max. P | 0.850627 |
| Location | 13,469,928 – 13,470,027 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 84.95 |
| Mean single sequence MFE | -13.20 |
| Consensus MFE | -12.19 |
| Energy contribution | -12.42 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.850627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13469928 99 + 22224390 UAUUCAGUUCUUGAUUAAUUUACUCUUCGUUUUAGAGACAUUUUUCUCGAGCCAUUCUCUUUAUUUUU-CAUUUUUCUAUCGCCGAUAAGAGAACUCACU ......((((..((..(((...((((.......))))..)))..))..))))..(((((((.......-..................)))))))...... ( -12.51) >DroEre_CAF1 14321 91 + 1 UAUGCAGUUCUUGAUUAAUUUACUCUUCGUUUUAGAGACAUUUUUCUCGAUCCAUUCUCUUUAUU---------UUCUAUUGACGAGAAGAGAACUCUCC .....(((((((......................((((......))))......(((((.(((..---------......))).)))))))))))).... ( -15.50) >DroYak_CAF1 14530 100 + 1 UAUUCAGUUCUUGAUUAAUUUACUCUUCGUUUUAGACACAUUUUUCUCGGUCCAUUCUCUUUAUUAUUUUUUUUUUUCAUCGACGAGAAGAGAACUCUAC .....(((((((...........(((.......))).......((((((..................................))))))))))))).... ( -11.58) >consensus UAUUCAGUUCUUGAUUAAUUUACUCUUCGUUUUAGAGACAUUUUUCUCGAUCCAUUCUCUUUAUU_UU___UUUUUCUAUCGACGAGAAGAGAACUCUCC .....(((((((..........((((.......))))......((((((.((.............................))))))))))))))).... (-12.19 = -12.42 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:19 2006