| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,468,084 – 13,468,180 |
| Length | 96 |
| Max. P | 0.572573 |
| Location | 13,468,084 – 13,468,180 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.06 |
| Mean single sequence MFE | -17.05 |
| Consensus MFE | -15.62 |
| Energy contribution | -15.73 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.34 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13468084 96 + 22224390 AGUCUUGCAAUUACUUUAUUU--------UAUUUUUUCUUUUUUUUUUUGGCAAGGCAAAUCGCAGACGCACAGCUUAGCGAUUGCCGUCGGUCUAGUCGUUUU .....................--------....................(((.((((..((.((((.(((........))).)))).))..)))).)))..... ( -17.10) >DroEre_CAF1 12488 84 + 1 AUACUUGCAAUUACUUUAUUU--------------------UUUUUUUUGGCAAAGCAAAUCGCAGACGCACAGCUUAGCGAUUGCCAUCGGUCUAGGCGUUUU ......((....(((......--------------------.......((((((.((.....))...(((........))).))))))..)))....))..... ( -13.16) >DroYak_CAF1 12723 101 + 1 AGUCUUGCAAUUACUUUAUUUAUUUCAAU---UUUUUAUGUUUUUUCUCGGCAAGGCAAAUCGCAGACGCACAGCUUAGCGAUUGCCAUCGGUCUAGCCGUUUU .............................---................((((.((((..((.((((.(((........))).)))).))..)))).)))).... ( -20.90) >consensus AGUCUUGCAAUUACUUUAUUU___________UUUUU_U_UUUUUUUUUGGCAAGGCAAAUCGCAGACGCACAGCUUAGCGAUUGCCAUCGGUCUAGCCGUUUU ................................................((((.((((..((.((((.(((........))).)))).))..)))).)))).... (-15.62 = -15.73 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:18 2006