Locus 5159

Sequence ID X_DroMel_CAF1
Location 13,467,086 – 13,467,198
Length 112
Max. P 0.794293
window8373

overview

Window 3

Location 13,467,086 – 13,467,198
Length 112
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 92.40
Mean single sequence MFE -22.70
Consensus MFE -19.39
Energy contribution -19.45
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.76
Structure conservation index 0.85
SVM decision value 0.60
SVM RNA-class probability 0.794293
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13467086 112 + 22224390
UCACAUGAGCCGAAAAUGGCUUAAUUUGAAUAUGAAUGGACUCAAACUGUCUAAAUAACACUAUCAUAACAUUUGCAUAGCUGGUUAUGAAA----AACUCAAGUAAAGUUAAUGC
.....((((((......))))))((((((.......(((((.......)))))..........(((((((....((...))..)))))))..----...))))))........... ( -22.60)
>DroSec_CAF1 11541 112 + 1
UCACAUGAGCCGAAAAUGGCUUAAUUUGAAUAUGAAUGGACUCAAACUGUCUAAAUAACACUAUCAUAACAUUUGCAUAGCUGGUUAUGAAA----AACUCACGUAAAGUCCAUAC
(((..((((((......))))))...)))......(((((((...(((((.......)))...(((((((....((...))..)))))))..----.......))..))))))).. ( -22.80)
>DroEre_CAF1 11499 116 + 1
UCACGUGAGUCGAAAAUGGCUUAAUUUGAAUAUGAAUGGACUCAAACUGUCUAAAUUCCACUAUCAUAACAUUUGCUUAGCUGGUUAUAAAAAGUAAAUUCAAGUUAAGUUAAUGC
((((....)).))...(((((((((((((((.....(((((.......)))))....((((((.((.......))..))).))).............))))))))))))))).... ( -25.40)
>DroYak_CAF1 11644 112 + 1
UCACAUGAGUCGAAAAUGGCUUAAUUUGAAUAUGAAUGGGCUCAAACUGUCUAAAUAACACUAUCAUAACAUUUGCAUAGCUGGUUAUGAAA----AACUCAAGUAAAGUUAAUGC
................((((((.((((((.......(((((.......)))))..........(((((((....((...))..)))))))..----...)))))).)))))).... ( -20.00)
>consensus
UCACAUGAGCCGAAAAUGGCUUAAUUUGAAUAUGAAUGGACUCAAACUGUCUAAAUAACACUAUCAUAACAUUUGCAUAGCUGGUUAUGAAA____AACUCAAGUAAAGUUAAUGC
.....((((((......))))))((((((.......(((((.......)))))..........(((((((....((...))..))))))).........))))))........... (-19.39 = -19.45 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:17 2006