Locus 5158

Sequence ID	X_DroMel_CAF1
Location	13,459,935 – 13,460,049
Length	114
Max. P	0.755451

overview

Window 2

Location	13,459,935 – 13,460,049
Length	114
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	78.00
Mean single sequence MFE	-24.42
Consensus MFE	-13.19
Energy contribution	-13.25
Covariance contribution	0.06
Combinations/Pair	1.05
Mean z-score	-2.17
Structure conservation index	0.54
SVM decision value	0.49
SVM RNA-class probability	0.755451
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13459935 114 + 22224390
UUGCUACGCAUUUCUUUCGGCUCUAUUAGAACCUGUUUUUGUUUACUUGCAAAA-AAUGGGUGGUGGUGAACCUUUGUAUAUAUACACAUGUAUGUACAUAUGUACAUUUGUGUA
..(((((.(((((.....((.((.....)).))....(((((......))))))-)))).)))))((....))..........((((((...((((((....)))))).)))))) ( -29.10)
>DroSec_CAF1 4582 89 + 1
NNGCUACGCAUUUCUUUC-GCUCUAUUAGAACCUGUUUUUGUU-AC-UGCAA-A-AAUGGGUGGUGUG--A-CCUUGUAUAUACA------------------UACAUAUGUGUA
....(((((((.....((-((.((......((((((((((((.-..-.))))-)-))))))))).)))--)-...(((((....)------------------)))).))))))) ( -22.70)
>DroSim_CAF1 4688 96 + 1
UUGCUACGCAUUUCUUUCGGCUCUAAUAGAACCUGUUUUUGUUUACUUGCAAAA-AAUGGGUGGUGUUGAACCUUUGUAUAUACA------------------UACAUAUGUGUA
....(((((((.......((.((.((((..((((((((((((......)).)))-)))))))..)))))).))..(((((....)------------------)))).))))))) ( -22.30)
>DroYak_CAF1 4551 100 + 1
UUGCUACGCAUUUCUUUUGGCUCUAUUCGAACCUGUUUUUGUUUACUUGCAAAAUAAUGGGUGGUG---AACCUUUGUAUAUAUGCAUAUGUGU------------GUAUGUGUG
(..((((.((((......((.((.....)).))...((((((......)))))).)))).))))..---).......(((((((((((....))------------))))))))) ( -23.60)
>consensus
UUGCUACGCAUUUCUUUCGGCUCUAUUAGAACCUGUUUUUGUUUACUUGCAAAA_AAUGGGUGGUGUU_AACCUUUGUAUAUACA__________________UACAUAUGUGUA
....((((((....................(((((((.((((......))))...)))))))(((.....)))....................................)))))) (-13.19 = -13.25 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:17 2006