Locus 5157

Sequence ID	X_DroMel_CAF1
Location	13,458,577 – 13,458,729
Length	152
Max. P	0.997161

overview

Window 0

Location	13,458,577 – 13,458,697
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	86.17
Mean single sequence MFE	-30.90
Consensus MFE	-24.50
Energy contribution	-25.50
Covariance contribution	1.00
Combinations/Pair	1.18
Mean z-score	-2.85
Structure conservation index	0.79
SVM decision value	2.42
SVM RNA-class probability	0.993683
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13458577 120 + 22224390
AAUUUCCACCCAAGCUAUACACCACACGAUAUCAAAUUAGCUAACACACCAACCUGUUAUCGAUAUUCCCCUUAGGAAUGUCGAUAACGUACGUGGCCGGUCUGGCAGCUCUGUGCAACA
......(((...((((...........(....)......((((((...(((...(((((((((((((((.....)))))))))))))))....)))...)).))))))))..)))..... ( -32.80)
>DroSec_CAF1 3278 120 + 1
AAUUUCCACCCAAGCUAUGCACUACAUGAUAUCAACUUAGCCAAGACGCCAACCUGUUAUCGAUAUUCCCCUUACGAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACA
.................(((((....((....)).....((((.(((((((...((((((((((((((.......))))))))))))))....))))..)))))))......)))))... ( -39.40)
>DroSim_CAF1 3362 120 + 1
AAUUUCCACCCAAGCUAUGCACCACAUGAUAUCGACUUAGCCAAGACACCAACCUGUUAUCGAUAUUCCCCUUAUUAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACA
.................(((((....((....)).....((((.(((.(((...(((((((((((((.........)))))))))))))....)))...)))))))......)))))... ( -32.30)
>DroEre_CAF1 3199 120 + 1
AAUUUAUACCCAAGUUAUUCACCGCAUAAUAUACUAUUAGCGAAGACACCUACCUAUUAUCGAUAUACAUCUCAGGAAUAUCGAUAACUUACGUGGCCGGUCUGGCAGCUCUGUGCAACA
.........((...........(((.(((((...)))))))).((((..((((.((((((((((((.(.......).))))))))))..)).))))...))))))..((.....)).... ( -22.80)
>DroYak_CAF1 3233 120 + 1
AAUUUAUACCCGAGUUAUUCACCACACCAUAUACUAUUAGUCAAGACACCAACCAGUUAUCGAUAUAACAGUGAGGAAUGUCGAUAACAUACGUGGCUGGUCUGGCAGCUCUGUGCAACA
...........(((((.....(((.((((..(((.....((....))........(((((((((((..(.....)..)))))))))))....)))..)))).))).)))))......... ( -27.20)
>consensus
AAUUUCCACCCAAGCUAUGCACCACAUGAUAUCAAAUUAGCCAAGACACCAACCUGUUAUCGAUAUUCCCCUUAGGAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACA
......(((...((((.............((......))((((.(((.(((...((((((((((((((.......))))))))))))))....)))...)))))))))))..)))..... (-24.50 = -25.50 +   1.00)

alignment

secondary structure

dotplot

Window 1

Location	13,458,617 – 13,458,729
Length	112
Sequences	5
Columns	112
Reading direction	forward
Mean pairwise identity	92.05
Mean single sequence MFE	-28.86
Consensus MFE	-25.08
Energy contribution	-26.64
Covariance contribution	1.56
Combinations/Pair	1.06
Mean z-score	-2.24
Structure conservation index	0.87
SVM decision value	2.81
SVM RNA-class probability	0.997161
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13458617 112 + 22224390
CUAACACACCAACCUGUUAUCGAUAUUCCCCUUAGGAAUGUCGAUAACGUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG
(((.((.(((..(((((((((((((((((.....))))))))))))))).....))..))).))((..((((((.(((....)))....)))).))..))...)))...... ( -32.10)
>DroSec_CAF1 3318 112 + 1
CCAAGACGCCAACCUGUUAUCGAUAUUCCCCUUACGAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG
...((((((((...((((((((((((((.......))))))))))))))....))))..)))).((..((((((.(((....)))....)))).))..))............ ( -33.80)
>DroSim_CAF1 3402 112 + 1
CCAAGACACCAACCUGUUAUCGAUAUUCCCCUUAUUAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG
...((((.(((...(((((((((((((.........)))))))))))))....)))...)))).((..((((((.(((....)))....)))).))..))............ ( -27.80)
>DroEre_CAF1 3239 112 + 1
CGAAGACACCUACCUAUUAUCGAUAUACAUCUCAGGAAUAUCGAUAACUUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG
...((((..((((.((((((((((((.(.......).))))))))))..)).))))...)))).((..((((((.(((....)))....)))).))..))............ ( -23.10)
>DroYak_CAF1 3273 112 + 1
UCAAGACACCAACCAGUUAUCGAUAUAACAGUGAGGAAUGUCGAUAACAUACGUGGCUGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG
...((((.(((....(((((((((((..(.....)..))))))))))).....)))...)))).((..((((((.(((....)))....)))).))..))............ ( -27.50)
>consensus
CCAAGACACCAACCUGUUAUCGAUAUUCCCCUUAGGAAUGUCGAUAACAUACGUGGCCGGUCUGGCAGCUCUGUGCAACAAGUUGAAAAAUAGAAGAAGCAAAUAGAAACAG
...((((.(((...((((((((((((((.......))))))))))))))....)))...)))).((..((((((.(((....)))....)))).))..))............ (-25.08 = -26.64 +   1.56)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:16 2006