Locus 5156

Sequence ID X_DroMel_CAF1
Location 13,454,572 – 13,454,680
Length 108
Max. P 0.524698
window8369

overview

Window 9

Location 13,454,572 – 13,454,680
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.67
Mean single sequence MFE -34.46
Consensus MFE -22.16
Energy contribution -22.00
Covariance contribution -0.16
Combinations/Pair 1.41
Mean z-score -1.54
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.524698
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13454572 108 + 22224390
AGCUAUCCUCCUGCGCUUCCAAGUUCUGUUUCUUGCGCAAAUCCCUGCGCGUACGCUUGCGGAUCAUCUUCAGCCGGCGAUGGAUUACAUCGUCAUCGCCGGGAACGA
........(((((.((((((((((...((....((((((......)))))).))))))).)))............(((((((.....)))))))...))))))).... ( -33.30)
>DroVir_CAF1 1085 108 + 1
AGCUCUCGGCCUGGGCCUCCUCGUUCUGCUUUUUGCGUGUAUCACGACGCAUUUGCUUGCGUAUCUUUUUGAGACGGCGAUGGGUAACCUCAUCAUCACCUGGCACAA
........(((.(((((..((((............((((...))))(((((......))))).......))))..)))((((((....))))))....)).))).... ( -32.70)
>DroGri_CAF1 942 108 + 1
AGCUCUCUGCCUGUGCCUCCUCGCUUUGUUUUUUGCGAGUGUCGCGUCGCAUCUGCUUGCGUAUCUUUUUGAGCCGGCGAUGCGUGACCUCAUCGUCGCCAGGCACAA
.((.....)).(((((((.(((((..........)))))....(((((((....((((............))))..)))))))(((((......))))).))))))). ( -38.40)
>DroEre_CAF1 1067 108 + 1
AGCUAUCUGCCUGCGCUUCCUCGCUCUGCUUCUUGCGCGAAUCCCUUCGCAUCUGCUUGCGAAUCUUCUUGAGCCGGCGAUGGGUCACCUCGUCAUCGCCUGGAACAA
.((.........))(.((((..((((.((.....))..(((....((((((......))))))..)))..)))).(((((((((......).)))))))).))))).. ( -31.00)
>DroYak_CAF1 1068 108 + 1
AGCUAUCCGCCUGCGCUUCCUCGCUCUGCUUCUUGCGCGUAUCCCUUCGCAUCUGCUUGCGUAUCUUCUUGAGCCGGCGAUGGGUCACCUCGUCGUCGCCGGGCACAA
........(((((.((......((((.......((((((........)((....))..))))).......)))).(((((((((....)))))))))))))))).... ( -36.84)
>DroMoj_CAF1 1111 108 + 1
AGCUCUCCACCUGGGCUUCCUCGUUCUGCUUUUUACGUGUAUCACGACGCAUUUGUUUGCGUAUCUUCUUGAGUCGGCGAUGGGUUAUCUCAUCGUCGCCAGGCACAA
.........(((((.....((((............((((...))))(((((......))))).......)))).((((((((((....)))))))))))))))..... ( -34.50)
>consensus
AGCUAUCCGCCUGCGCUUCCUCGCUCUGCUUCUUGCGCGUAUCCCGUCGCAUCUGCUUGCGUAUCUUCUUGAGCCGGCGAUGGGUCACCUCAUCAUCGCCAGGCACAA
........(((((.(((..(((((...((....(((((........)))))...))..))(......)..)))..)))((((((....)))))).....))))).... (-22.16 = -22.00 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:14 2006