Locus 5155

Sequence ID X_DroMel_CAF1
Location 13,451,071 – 13,451,190
Length 119
Max. P 0.656099
window8368

overview

Window 8

Location 13,451,071 – 13,451,190
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.28
Mean single sequence MFE -34.52
Consensus MFE -30.33
Energy contribution -29.82
Covariance contribution -0.50
Combinations/Pair 1.12
Mean z-score -1.60
Structure conservation index 0.88
SVM decision value 0.26
SVM RNA-class probability 0.656099
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13451071 119 - 22224390
CGGUUUUAUCACCAAAUAGCCGUACGUACGUACAGCUGAUAUACAGUCUUAUCCGUUGUUUGCGAGACCAGCUAAUCUAAGUGGUAAAUGUAAAUGGUUUGGAUUGGUGGGUGUUC-UCU
.........((((...((((.((((....)))).)))).....((((((...(((((...((((..((((.((......))))))...)))))))))...))))))...))))...-... ( -31.60)
>DroSec_CAF1 4626 119 - 1
UGGUUUUAUCACCAAAUAGCCAUACGUACGUACAGCUGAUAUACAGUCUUAUCCGUUGUUUGCGAGCCCAGCUAAUCUAAGUGGUAAAUGUAAAUGGUUUGGAUUGGCGGGUGUUC-GCU
(((((............))))).........(((((.((((........)))).)))))..((((((((.(((((((((((..((........))..))))))))))).)).))))-)). ( -35.80)
>DroSim_CAF1 5003 119 - 1
UGGUUUUAUCACCAAAUAGCCGUACGUACGUACAGCUGAUAUACAGUCUUAUCCGUUGUUUGCGAGCCCAGCUAAUCUAGGUGGUAAAUGUAAAUGGUUUGGAUUGGCGGGUGUUC-GCU
.(((......)))(((((((.((((....)))).((((.....)))).......)))))))((((((((.(((((((((..(.((........)).)..))))))))).)).))))-)). ( -39.10)
>DroYak_CAF1 5011 116 - 1
UGGUUUUAUCACUAAAUAGCCGU----ACGUACAGCUGAUAUACAGUCUUAUCCGUUGUUUGCGAGCCCAGCUAAUCUAAGUGGUAAAUGUAAAUGGUUUGGAUUGGCGGGUGUUUUCCU
.((......(((......(((((----(...(((((.((((........)))).))))).)))).))((.(((((((((((..((........))..))))))))))))))))....)). ( -31.60)
>consensus
UGGUUUUAUCACCAAAUAGCCGUACGUACGUACAGCUGAUAUACAGUCUUAUCCGUUGUUUGCGAGCCCAGCUAAUCUAAGUGGUAAAUGUAAAUGGUUUGGAUUGGCGGGUGUUC_GCU
(((((............)))))......((((((((.((((........)))).)))))..))).((((.(((((((((((..((........))..)))))))))))))))........ (-30.33 = -29.82 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:13 2006