Locus 5153

Sequence ID X_DroMel_CAF1
Location 13,444,594 – 13,444,696
Length 102
Max. P 0.986651
window8365

overview

Window 5

Location 13,444,594 – 13,444,696
Length 102
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.24
Mean single sequence MFE -38.12
Consensus MFE -20.22
Energy contribution -19.45
Covariance contribution -0.77
Combinations/Pair 1.42
Mean z-score -2.83
Structure conservation index 0.53
SVM decision value 2.05
SVM RNA-class probability 0.986651
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13444594 102 + 22224390
-UUUUUCUUCUACCUGGGCAGACAGCUGUUCGUAUAACUUCAGUUUCUUGAU-CAGCU-CCUCUU-CACUGGCAGCUAGCUGUUGGGCAAGCUG-AUCGUGCUCU-UU
-..............(((((((.(((((............)))))))..(((-(((((-......-..(..((((....))))..)...)))))-))).))))).-.. ( -28.80)
>DroPse_CAF1 4098 103 + 1
UCAUUUGUUUGGCCUUGGCUCGCAGCUCCUUGAUCAGAUCACGCUUUUUGGC-GGCAU-CCUCCU-GCAUGGCCUGCAGAUGCUGCCUGAGCUG-CUCCUGCUUG-CA
.....(((..(((...((...(((((((..((((...))))........(((-(((((-(....(-(((.....))))))))))))).))))))-).)).))).)-)) ( -35.60)
>DroSec_CAF1 3883 107 + 1
-CUUUUCUUCUGCCCGGGCAGACAGCUGCUCGAAUAGCUUCAGUUUCUUGGUUCAGCUUCCUCUUGGACUGACAGCUAGCUGUUGGACAAGCUGGGUCGUGCUCUUUU
-.......(((((....)))))(((((..((.(((((((..((((..(..((((((.......))))))..).))))))))))).))..))))).............. ( -34.40)
>DroSim_CAF1 4389 102 + 1
-CUUUUCUUCUGCCCGGGCAGACAGCUGUUCGAAUAGCUUCAGUUUCUUGGU-CAGCU-CCUCUU-GACUGGCAGCUAGCUGUUGGGCAAGCUG-GUCGUGCUCU-UU
-..............((((((((((((((((((.(((((((((((....((.-.....-))....-)))))).)))))....)))))).)))).-))).))))).-.. ( -35.80)
>DroEre_CAF1 4205 102 + 1
-CUUUUCUUCUGUCUGCGCAGACAGCUGGUCGAAUAGCAUCAGCUGCUUGGU-CAGGU-CGUCUU-GACUGGCAGCUAGCUGUUGGGCGAGCUG-GUCGUGCUCU-UU
-..............((((.(((((((.(((.((((((...(((((((.(((-((((.-...)))-))))))))))).)))))).))).)))).-)))))))...-.. ( -47.50)
>DroYak_CAF1 4495 102 + 1
-CAUUUCUUCUGCCUGGGCAGACAGCUGGUCGAAUAGCUUAAGCUGCUUGGG-CAGGU-CCUCUU-GACUGGCAGCUAGCUGUUGGGCGAGCUG-GUCGUGCUCU-UU
-..............((((((((((((.(((.(((((((..(((((((.(..-((((.-...)))-).).)))))))))))))).))).)))).-))).))))).-.. ( -46.60)
>consensus
_CUUUUCUUCUGCCUGGGCAGACAGCUGCUCGAAUAGCUUCAGCUUCUUGGU_CAGCU_CCUCUU_GACUGGCAGCUAGCUGUUGGGCAAGCUG_GUCGUGCUCU_UU
........(((((....)))))(((((..((((..(((....)))..)))).................(((((((....)))))))...))))).............. (-20.22 = -19.45 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:10 2006