Locus 5152

Sequence ID X_DroMel_CAF1
Location 13,441,372 – 13,441,476
Length 104
Max. P 0.981552
window8364

overview

Window 4

Location 13,441,372 – 13,441,476
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 74.75
Mean single sequence MFE -30.12
Consensus MFE -23.16
Energy contribution -23.00
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.80
Structure conservation index 0.77
SVM decision value 1.89
SVM RNA-class probability 0.981552
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13441372 104 - 22224390
GACUAAAAUGUGCCUAAAUCUGCUAGUUACGCCAAACACGGGGAUAGACUUCUUGGGCUACUCACACGCUAGUGUGUCCACGCUGGCCUCUCUGGUCAGCGAGC
.........((((((((.....(((....(.((......)).).))).....)))))).)).(((((....)))))....((((((((.....))))))))... ( -33.10)
>DroSec_CAF1 701 92 - 1
GACUAAAAU------------GCUAGUUACGCCAAAAUCGGUGGCAGACUUAAUGGGCUACUCACACGCCAGUGUGUCCACGCUGGCCUCUCUGGUCAGCGAGC
(((((....------------..))))).((((......))))((........(((((.....((((....)))))))))((((((((.....)))))))).)) ( -31.60)
>DroSim_CAF1 1161 92 - 1
GACUAAAAU------------GCUAGUUACGCCAAAAUCGGUGGCAGACUUAAUGGGCUACUCACACGCCAGUGUGUCCACGCUGGCCUCUCUGGUCAGCGAGC
(((((....------------..))))).((((......))))((........(((((.....((((....)))))))))((((((((.....)))))))).)) ( -31.60)
>DroEre_CAF1 993 86 - 1
GACUACAAU------------------UUUACUUAAGUCAGGGACAGAUUUCAUGGGCUACUCACAGGCCAGUGUGUCCACGCUGGCUUCUCUGGUCAGCGAGG
((((.....------------------........))))..(((((.((....(((.((......)).))))).))))).((((((((.....))))))))... ( -28.42)
>DroYak_CAF1 1161 91 - 1
CACAAAAAUGAUCCAAUAU--CCAAGAUCUACUA-----------AAAUUGCAUGGGCUACUCACACGCCAGUGUGUCCACGCUGGCCUCUCUGGUCAGCGAGC
.........((((......--....)))).....-----------.....((.(((((.....((((....)))))))))((((((((.....)))))))).)) ( -25.90)
>consensus
GACUAAAAU____________GCUAGUUACGCCAAAAUCGGGGACAGACUUCAUGGGCUACUCACACGCCAGUGUGUCCACGCUGGCCUCUCUGGUCAGCGAGC
.....................................................(((((....(((......))).)))))((((((((.....))))))))... (-23.16 = -23.00 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:09 2006