Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,433,345 – 13,433,437 |
Length | 92 |
Max. P | 0.614079 |
Location | 13,433,345 – 13,433,437 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.00 |
Mean single sequence MFE | -24.57 |
Consensus MFE | -16.42 |
Energy contribution | -16.95 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.69 |
Structure conservation index | 0.67 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13433345 92 - 22224390 UA---AAA---AA--AAACC-------AAAAUUCGUUUAAUUACGAACUCGAAAGCAGCUCCGAGGAGGAG-GAGGUUGUCGAGGAAACCCGCGAGGAGACGUAAGUA ..---...---..--.....-------....(((((......)))))(((((.(((..((((.....))))-...))).))))).....((....))..((....)). ( -24.50) >DroPse_CAF1 39761 94 - 1 CUGUUAUA---AU--UAAA--------CGACUCCGUUUAAUUACGAACUCCAAAGCAGCUCCGAGGAGGAG-GAGGUUGUCGAGGAGACCAGAGAGGAGACGUAAGUA ((((..((---((--((((--------((....))))))))))..).((((...((((((((........)-)).)))))...))))..)))...(....)....... ( -26.90) >DroGri_CAF1 19188 105 - 1 UUGUUUUUUGCAC--AAAACCAUACACGUAAAUCGUUUAAUUACGAACACGUCAGCAGUUCCGAGGAGGAG-GAGGUUGUCGAGGAGACCAGAGAGGAGACGUAAGUA ......(((((..--....((...........((((......))))...((.((((..((((.....))))-...)))).)).))..........(....)))))).. ( -20.50) >DroSim_CAF1 27858 91 - 1 UC---GAA---AA--AAAA--------UUAAUUCGUUUAAUUACGAACUCGAAAGCAGCUCCGAGGAGGAG-GAGGUUGUCGAGGAAACCCGCGAGGAGACGUAAGUA ..---...---..--....--------....(((((......)))))(((((.(((..((((.....))))-...))).))))).....((....))..((....)). ( -24.50) >DroYak_CAF1 38617 94 - 1 UC---AAA---AAAAAAAAC-------UGAAUUCGUUUAAUUACGAACUCGAAAGCAGCUCCGAGGAGGAG-GAGGUUGUCGAGGAGACCCGCGAGGAGACGUAAGUA ..---...---.........-------....(((((......)))))(((((.(((..((((.....))))-...))).))))).....((....))..((....)). ( -24.50) >DroPer_CAF1 42111 95 - 1 CUGUUAUA---AU--UAAA--------CGACUCCGUUUAAUUACGAACUCCAAAGCAGCUCCGAGGAGGAGGGAGGUUGUCGAGGAGACCAGAGAGGAGACGUAAGUA ...(..((---((--((((--------((....))))))))))..).((((.......((((.....))))...((((........)))).....))))((....)). ( -26.50) >consensus UU___AAA___AA__AAAA________CGAAUUCGUUUAAUUACGAACUCGAAAGCAGCUCCGAGGAGGAG_GAGGUUGUCGAGGAGACCAGAGAGGAGACGUAAGUA ........................................(((((..(((((.(((..((((.....))))....))).)))))....((.....))...)))))... (-16.42 = -16.95 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:08 2006