Locus 5150

Sequence ID X_DroMel_CAF1
Location 13,432,061 – 13,432,167
Length 106
Max. P 0.998479
window8362

overview

Window 2

Location 13,432,061 – 13,432,167
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 96.62
Mean single sequence MFE -24.63
Consensus MFE -23.12
Energy contribution -23.52
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.94
SVM decision value 3.11
SVM RNA-class probability 0.998479
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13432061 106 + 22224390
AUAGGUCUUUCUUUCUUCGUUUCAUUGGUUUCUCACACAA-UUUACUUACUUCCUGCAACAAGAACGAGAUCAAAAAGAGAUGGAAGAGAGAAAGAGAGAGAUAAAC
.....((((((((((((((((((.((((((((........-.........................))))))))...))))).)))))))))))))........... ( -24.71)
>DroSec_CAF1 27437 106 + 1
AUAGGUCUUUCUUUCUUCGUUUCAUUGGUUUCUCACACAA-UUUACUUACUUCCUGCAACAAGAACGAGAUCAAAAAGAGAUGGAAGAGAGAAAGAGAGAGAUAAAC
.....((((((((((((((((((.((((((((........-.........................))))))))...))))).)))))))))))))........... ( -24.71)
>DroEre_CAF1 22427 106 + 1
AUAGGUCUUUCAUUCUUCGUUUCAUUGGUUUCUCACACAA-UUUACUUACUUCCUGCAACAAGAACGAGAUCAAAAAGAGAUGGAAGAGAGAAAGAGAGAGAUAAAC
.....((((((.(((((((((((.((((((((........-.........................))))))))...))))).)))))).))))))........... ( -20.21)
>DroYak_CAF1 37362 106 + 1
AUAGGUCUUUCUUUCUUCGUUUCAUUGGUUUCUCACACAA-UUUACUUACUUCCUGCAACAAGAACGAGAUCAAAAAGAGAUGGAAGAGAGAAAGAGAGAGAUAAAC
.....((((((((((((((((((.((((((((........-.........................))))))))...))))).)))))))))))))........... ( -24.71)
>DroAna_CAF1 25906 107 + 1
AGAGAUCUUUCUUUCUUCUUUUCAUUGGUUUCUCACACUUUUUUACUUACUUCCUGUAACAAGAAAGAGAUCAAAAAGAGAUGGAAGAGAGAAAGAGAGAGAUAAAC
.....((((((((((((((((((.(((((((((....(((..((((.........)))).)))..)))))))))...)))).))))))))))))))........... ( -28.80)
>consensus
AUAGGUCUUUCUUUCUUCGUUUCAUUGGUUUCUCACACAA_UUUACUUACUUCCUGCAACAAGAACGAGAUCAAAAAGAGAUGGAAGAGAGAAAGAGAGAGAUAAAC
.....((((((((((((((((((.((((((((..................................))))))))...))))).)))))))))))))........... (-23.12 = -23.52 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:07 2006