Locus 5149

Sequence ID X_DroMel_CAF1
Location 13,430,549 – 13,430,669
Length 120
Max. P 0.600810
window8361

overview

Window 1

Location 13,430,549 – 13,430,669
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.39
Mean single sequence MFE -31.27
Consensus MFE -27.95
Energy contribution -28.32
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.18
Structure conservation index 0.89
SVM decision value 0.14
SVM RNA-class probability 0.600810
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13430549 120 - 22224390
GAGUUCAUCAAGCGUCAGGACCAGAAGCGCUCCGACCUCGAUGAUCAGCUGAAAGAAUACAUCACCGAGUGGCGCAAACAGAGAUCCAAGGAGGAGGAUGAGCUGAAGAAGCUGAAGGAG
.((((((((..(((((((((.(......).)))...((((.((((...(.....).....)))).)))))))))).........(((.....))).))))))))................ ( -30.90)
>DroVir_CAF1 17470 120 - 1
GAGUUCAUCAAGCGUCAGGACCAGAAGCGCUCCGAUCUCGAUGAACAGCUGAAAGAAUACAUCAGCGAAUGGCGCAAACAGAGAGCCAAGGAGGAGGAUGAGCUGAAGAAACUGAAGGAG
.((((((((..((.((.......)).)).((((..............(((((.........)))))...((((.(.......).)))).))))...))))))))................ ( -30.60)
>DroPse_CAF1 36684 120 - 1
GAGUUCAUCAAGCGUCAGGACCAGAAGCGAUCCGAUCUCGAUGAACAGCUGAAAGAAUACAUCAGCGAAUGGCGCAAACAGAGAUCCAAGGAGGAGGAUGAGCUGAAGAAGCUGAAGGAG
.((((((((..(((((((((.(......).)))..............(((((.........)))))...)))))).........(((.....))).))))))))................ ( -31.30)
>DroWil_CAF1 16920 120 - 1
GAGUUCAUCAAGCGUCAGGAUCAGAAGCGUUCCGAUCUCGAUGAACAGCUGAAGGAAUAUAUCAGCGAAUGGCGCAAACAGAGAUCCAAGGAGGAGGAUGAGUUGAAGAAACUGAAGGAG
...((((((..(((((((((((.((.....)).))))).........(((((.........)))))...)))))).........(((.....))).)))))).................. ( -28.40)
>DroMoj_CAF1 20037 120 - 1
GAGUUCAUCAAGCGUCAGGAUCAGAAGCGCUCCGAUCUCGAUGAACAGCUGAAAGAAUACAUCAGCGAAUGGCGCAAACAGAGAGCCAAGGAGGAGGAUGAGCUGAAGAAACUGAAGGAG
.((((((((...((((..((((.((.....)).))))..))))....(((((.........)))))...((((.(.......).))))........))))))))................ ( -31.80)
>DroAna_CAF1 24178 120 - 1
GAGUUCAUCAAGCGUCAGGACCAGAAGCGCUCCGACCUCGAUGAGCAGCUGAAAGAAUACAUCAGCGAGUGGCGCAAACAAAGAUCCAAGGAGGAGGAUGAGCUGAAGAAACUGAAGGAG
.((((((((..((((((...........((((((....))..)))).(((((.........)))))...)))))).........(((.....))).))))))))................ ( -34.60)
>consensus
GAGUUCAUCAAGCGUCAGGACCAGAAGCGCUCCGAUCUCGAUGAACAGCUGAAAGAAUACAUCAGCGAAUGGCGCAAACAGAGAUCCAAGGAGGAGGAUGAGCUGAAGAAACUGAAGGAG
.((((((((..(((((((((.(......).)))..............(((((.........)))))...)))))).........(((.....))).))))))))................ (-27.95 = -28.32 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:06 2006