Locus 5148

Sequence ID X_DroMel_CAF1
Location 13,430,349 – 13,430,469
Length 120
Max. P 0.938882
window8360

overview

Window 0

Location 13,430,349 – 13,430,469
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 99.33
Mean single sequence MFE -30.48
Consensus MFE -29.86
Energy contribution -29.86
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.98
SVM decision value 1.30
SVM RNA-class probability 0.938882
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13430349 120 + 22224390
CCCUUCUUGUCCUUGUCCUUCAUGGCCUGCAGCAUAGCCUGGCGCUUCUUCUCGGCCUCCUCGAGACGCAUGCGCUUCUCCUCGAUCUCGCGCUGCUUCUUCUCCUCAGCCUCACGGACA
.............(((((.....(((..(((((.......(((((..(.((((((.....)))))).)...)))))......((....)).)))))............)))....))))) ( -30.64)
>DroSec_CAF1 25764 120 + 1
CCCUUCUUGUCCUUGUCCUUCAUGGCCUGCAGCAUAGCCUGGCGCUUCUUCUCGGCCUCCUCGAGACGCAUGCGCUUCUCCUCGAUCUCGCGCUGCUUCUUCUCCUCAGCCUCACGGACA
.............(((((.....(((..(((((.......(((((..(.((((((.....)))))).)...)))))......((....)).)))))............)))....))))) ( -30.64)
>DroSim_CAF1 25134 120 + 1
CCCUUCUUGUCCUUGUCCUUCAUGGCCUGCAGCAUAGCCUGGCGCUUCUUCUCGGCCUCCUCGAGACGCAUGCGCUUCUCCUCGAUCUCGCGCUGCUUCUUCUCCUCAGCCUCACGGACA
.............(((((.....(((..(((((.......(((((..(.((((((.....)))))).)...)))))......((....)).)))))............)))....))))) ( -30.64)
>DroEre_CAF1 20746 120 + 1
CCCUUCUUGUCCUUGUCCUUCAUGGCCUGCAGCAUAGCCUGGCGCUUCUUUUCGGCCUCCUCGAGACGCAUGCGCUUCUCCUCAAUCUCGCGCUGCUUCUUCUCCUCAGCCUCACGGACA
.......(((((.((.........(((.((......))..)))..........(((......((((.(((.((((..............))))))).)))).......))).)).))))) ( -29.86)
>DroYak_CAF1 35641 120 + 1
CCCUUCUUGUCCUUGUCCUUCAUGGCCUGCAGCAUAGCCUGGCGCUUCUUCUCGGCCUCCUCGAGACGCAUGCGCUUCUCCUCGAUCUCGCGCUGCUUCUUCUCCUCAGCCUCACGGACA
.............(((((.....(((..(((((.......(((((..(.((((((.....)))))).)...)))))......((....)).)))))............)))....))))) ( -30.64)
>consensus
CCCUUCUUGUCCUUGUCCUUCAUGGCCUGCAGCAUAGCCUGGCGCUUCUUCUCGGCCUCCUCGAGACGCAUGCGCUUCUCCUCGAUCUCGCGCUGCUUCUUCUCCUCAGCCUCACGGACA
.......(((((.((.........(((.((......))..)))..........(((......((((.(((.((((..............))))))).)))).......))).)).))))) (-29.86 = -29.86 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:05 2006