Locus 5146

Sequence ID X_DroMel_CAF1
Location 13,421,885 – 13,421,982
Length 97
Max. P 0.551763
window8357

overview

Window 7

Location 13,421,885 – 13,421,982
Length 97
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.95
Mean single sequence MFE -23.12
Consensus MFE -13.18
Energy contribution -15.27
Covariance contribution 2.09
Combinations/Pair 1.11
Mean z-score -1.59
Structure conservation index 0.57
SVM decision value 0.04
SVM RNA-class probability 0.551763
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13421885 97 - 22224390
-GAACAAAUAGAUAUAUGCUGGAGAAAAAAAAGGGAGGCGUAAAUCAGCGCGCAGAUAGCUGAACUUGAGUUAACUCAACGCCACUCGAGUCGAGUGG
-................(((.((.........(((.(((((...(((((.........)))))...((((....))))))))).)))...)).))).. ( -23.30)
>DroVir_CAF1 8940 78 - 1
GUCGCAAUCAAGC--GGCCUGC-------AAAAGGAUGCGGCAUCCACAGUACACCCCACAAAACUUG-----ACUCGA-----CUCGACACGACUG-
((((...(((((.--.(((.((-------(......)))))).......((.......))....))))-----)..)))-----)............- ( -14.90)
>DroSec_CAF1 17462 96 - 1
-GAACAAACAGAUAUAUGCUGGAGAAAA-AAAAGGAGGCGUAAAUCAGCGCCCAGAUAGCUGAACUUGAGUUAACUCAACGCCACUCGAGUCGAGUGG
-.......(((.......))).......-.......(((((...(((((.........)))))...((((....)))))))))(((((...))))).. ( -24.20)
>DroSim_CAF1 16769 97 - 1
-GAACAAGCAGAUAUAUGCUGGAGAAAAAAAAAGGAGGCGUAAAUCAGCGCGCAGAUAGCUGAACUUGAGUUAACUCAACGCCACUCGAGUCGAGUGG
-.....((((......))))................(((((...(((((.........)))))...((((....)))))))))(((((...))))).. ( -26.60)
>DroEre_CAF1 12284 94 - 1
-GAACAAACAAAUAUAUGCUGGAG---AAAAAAGGAGGUGUAAAUCAGCGCGCAGAUAGCUGAACUUGAGUUAACUCAACGCCACUCCAGUCGAGUGG
-................(((((((---.........(((((...(((((.........)))))...((((....))))))))).)))))))....... ( -23.90)
>DroYak_CAF1 27137 94 - 1
----CAAGCAAAUAUAUGCUGGAGAAGAAAAAAGGAGGCGUAAAUCAGCGCGCAGAUAGCUGAACUUGAGUUAACUCAACGCCACUCGAGUCGAGUGG
----..((((......))))................(((((...(((((.........)))))...((((....)))))))))(((((...))))).. ( -25.80)
>consensus
_GAACAAACAAAUAUAUGCUGGAGAAAAAAAAAGGAGGCGUAAAUCAGCGCGCAGAUAGCUGAACUUGAGUUAACUCAACGCCACUCGAGUCGAGUGG
....................................(((((...(((((.........)))))...((((....)))))))))((((.....)))).. (-13.18 = -15.27 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:02 2006