| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,419,612 – 13,419,722 |
| Length | 110 |
| Max. P | 0.732791 |
| Location | 13,419,612 – 13,419,722 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 76.01 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -17.92 |
| Energy contribution | -17.57 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13419612 110 - 22224390 UGGUGCAGCACCGCAUCGUUCCAUGGCACGUCCAGGAAUUUCAGUAUCUUUCGCAUCCACUCCUCGGGAUGCAGUACCAGCUGCUCAUAGUAAACCU--GGCAGA-------GAGAAAG .(((((......)))))(((((.(((.....)))))))).......((((((((((((........))))))....((((.(((.....)))...))--))..))-------))))... ( -34.10) >DroVir_CAF1 6735 106 - 1 UGAUGCAGCACCGCCUCGUUCCAUGGCACAUCCAAGAACUUUAAGAUAUUUCGCAUCCACUCCUCCGGAUGCAGCACCAGCUGCUCAUAGUAAACCUGUAAAACAA------------- (((.(((((........((((..(((.....))).)))).............((((((........)))))).......))))))))...................------------- ( -25.80) >DroGri_CAF1 5396 103 - 1 UGAUGCAGCACCGCCUCGUUCCAUGGCACCUCCAAGAACUUUAAGAUUUUGCGCAUCCAUUCCUCCGGAUGCAGCACCAGCUGCUCAUAAUACACCU--AGUACA-------------- (((.(((((........((((..(((.....))).))))..........(((((((((........)))))).)))...))))))))..........--......-------------- ( -28.10) >DroWil_CAF1 5726 108 - 1 UGAUGUAAUACCGCAUCAUUCCAUGGCACGUCCAGAAAUUUCAAUAUUUUACGCAUCCAUUCCUCCGGAUGCAAAACGAGCUGCUCAUAGUAAACCU--GCAUAA-------C--AAUG ((((((......))))))....((((((.(..(.(((((......)))))..((((((........)))))).....)..)))).))).(((....)--))....-------.--.... ( -22.20) >DroMoj_CAF1 9390 117 - 1 UGGUGCAGCACCGCACUGUUCCACGGCACGUCCAAGAACUUCAAAAUCUUCCGCAUCCACUCCUCCGGAUGCAGCACCAGCUGCUCAUAGUAGACCU--AAGAGAAGGCAAAGGGGAUC ((((((...........((((...((.....))..)))).............((((((........)))))).))))))(((.(((.(((.....))--).)))..))).......... ( -30.60) >DroAna_CAF1 8841 106 - 1 UGAUGGAGGACCGCAUCGUUCCAUGGCACCUCCAGGAACUUAAGGAUCUUGCGCAUCCAUUCCUCCGGAUGGAGGACUAAUUGUUCGUAGUACACCU--GUAUGA-------UGG---- .(((((((((((.....(((((.(((.....))))))))....)).)))).).))))...((((((....)))))).........(((.((((....--)))).)-------)).---- ( -29.70) >consensus UGAUGCAGCACCGCAUCGUUCCAUGGCACGUCCAAGAACUUCAAGAUCUUGCGCAUCCACUCCUCCGGAUGCAGCACCAGCUGCUCAUAGUAAACCU__AAAAGA______________ (((.(((((........((((...((.....))..)))).............((((((........)))))).......))))))))................................ (-17.92 = -17.57 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:00 2006