Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,419,027 – 13,419,122 |
Length | 95 |
Max. P | 0.668139 |
Location | 13,419,027 – 13,419,122 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.98 |
Mean single sequence MFE | -34.54 |
Consensus MFE | -18.66 |
Energy contribution | -18.90 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.16 |
Structure conservation index | 0.54 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.668139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13419027 95 - 22224390 GCACCCCGACCAAGUUAAUCAUCGUUGAUUGCGAUGGGUGGAUGGCG----UGGUGGCCAAAUGGCAUGGUGGCCAGGUGGGCAUGUGAGCAUCUGACU .(((.(((.(((......(((((((.....))))))).))).))).)----))(((.(((..((((......))))..))).)))((.((...)).)). ( -33.90) >DroSec_CAF1 14667 91 - 1 GCACCCCGACCAAGUUAAUCAUCGUUGAUUGAGAUGGGU----GGCG----UGGUGGCCAGAUGGCAUGGUGUCCAGGUGGGCAUGUGAGCAUCUGACU .((((.((.(((..(((((((....)))))))..)))..----..))----.))))..((((((.((((.(((((....)))))))))..))))))... ( -34.30) >DroSim_CAF1 13962 91 - 1 GCACCCCGACCAAGUUAAUCAUCGUUGAUUGAGAUGGGU----GGCG----UGGUGGCCAGAUGGCACGGUGUCCAGGUGGGCAUGUGAGCAUCUGACU .((((.((.(((..(((((((....)))))))..)))..----..))----.))))..((((((.((((.(((((....)))))))))..))))))... ( -36.80) >DroEre_CAF1 9613 75 - 1 GCACCCCGACCAAGUUAAUCAUAGUUGAUUGAGAUGGGU----GGC----CAGGUGGCCA----------------GGUGGGCAUGUGAGCAUCUGGCU .(((((((.(((..(((((((....)))))))..))).)----)).----..))))((((----------------((((..(....)..)))))))). ( -30.60) >DroYak_CAF1 24019 88 - 1 GCUCCCCGACCAAGUUAAUCAUCGUUGAUUGAGAUGGGU----GGCGCCACACCUGGCCACCUG-------CUCCUGGUGGCCAUGUGAGCAUCUGACU ((..((((.(..(((((((....)))))))..).)))).----.))((((((..((((((((..-------.....)))))))))))).))........ ( -37.10) >consensus GCACCCCGACCAAGUUAAUCAUCGUUGAUUGAGAUGGGU____GGCG____UGGUGGCCAGAUGGCA_GGUGUCCAGGUGGGCAUGUGAGCAUCUGACU ((.((((..(((..(((((((....)))))))..)))......(((..........))).................)).))))..((.((...)).)). (-18.66 = -18.90 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:59 2006