| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,416,925 – 13,417,035 |
| Length | 110 |
| Max. P | 0.566624 |
| Location | 13,416,925 – 13,417,035 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 89.39 |
| Mean single sequence MFE | -22.25 |
| Consensus MFE | -16.65 |
| Energy contribution | -18.15 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13416925 110 - 22224390 AUAUUUGAUUUCAUUUGUGUGACCGCACAAUUUUGAGAGCAAUUAAAUCAAAGUUAAUUGCCUUUUUUAAUUGAAUGAAAUUGAGCAAUAGUUUAAGCAAUUACGAUAUA ...((..(((((((((((((....))))((((..((((((((((((.......))))))).)))))..)))))))))))))..))......................... ( -23.20) >DroSec_CAF1 12650 110 - 1 AUAUUUGAUUUAAUUUGUGUGACCGCACAAUUUUGAGAGCAAUUAAAUCAAAGUUAAUUGCCUUUUUUAAUUGAAUGAAAUUGAGCAAUAGUGUAAGCAAUUACGGUCUA ....................((((((.((((((((((.((((((((.......)))))))))))............))))))).))......((((....)))))))).. ( -23.60) >DroEre_CAF1 7008 110 - 1 AUAUUUCAUUUCAUCUGUAUGACCGCACAUUUUUGGGAGCAAUUAAAUCAAACUUAAUUGCCCUUUUUAAUUGAAUGAAAUUGAGCAAUAGUGUAAGCAAUUACAGCUUG ..((((((((((((....)))).....((.((..(((.((((((((.......)))))))))))....)).)))))))))).((((.....(((((....))))))))). ( -21.50) >DroYak_CAF1 21851 110 - 1 AUAUUUGAUUUAAUUUGUGUGACCGCACAUUUUUGAGAGCAAUUAUAUCAAAGUUAAUUGCCUUUUUUAAUUAAACAAAAUUGAGCAAUAGUGCCAGUCAUUACGGUUUA ..............(((((((((.((((......(((.(((((((.........)))))))))).(((((((......))))))).....))))..)))).))))).... ( -20.70) >consensus AUAUUUGAUUUAAUUUGUGUGACCGCACAAUUUUGAGAGCAAUUAAAUCAAAGUUAAUUGCCUUUUUUAAUUGAAUGAAAUUGAGCAAUAGUGUAAGCAAUUACGGUUUA ...((..(((((((((((((....))))......(((.((((((((.......)))))))))))........)))))))))..))......(((((....)))))..... (-16.65 = -18.15 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:58 2006