Locus 5141

Sequence ID X_DroMel_CAF1
Location 13,416,442 – 13,416,537
Length 95
Max. P 0.896298
window8351

overview

Window 1

Location 13,416,442 – 13,416,537
Length 95
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 56.57
Mean single sequence MFE -25.87
Consensus MFE -11.36
Energy contribution -10.27
Covariance contribution -1.10
Combinations/Pair 1.57
Mean z-score -1.51
Structure conservation index 0.44
SVM decision value 0.99
SVM RNA-class probability 0.896298
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13416442 95 + 22224390
A-----AAUGUAAUUGGU---------------UGGGGCCAGAUAAAGUUGUGACCCCGAUUUAGAUGGUGCAAAAUAGGUGACUCCAUGUUUUCGGGCUAUAAAAUUGCGGUUU
.-----..((((((((((---------------(((((.((.(......).)).))))))))...(((((.(((((((((.....)).)))))).).)))))..))))))).... ( -25.60)
>DroPse_CAF1 22357 115 + 1
ACACAAAAUGCGCUUUGUGGCAUAUCCGAUUUGGGUGCAUGAGCUCUUAAUUCCUUAACUUUUGAGUGCACAAAAUGAAUGCAAGAUUUUACUCACAACCGCAAUCGUUUCACUU
.......((((((((..(((.....)))....))))))))..((.(((((...........))))).))...((((((.(((..................))).))))))..... ( -21.07)
>DroSec_CAF1 12160 95 + 1
A-----AAUGUAAUUGGU---------------UGGGGCCAGAUAAAGUUGUGACCCCGAUUUAGAUGGUGCAAAAUAGGUGACUCCAUGUUUUCGGGCUAUAAAAUUGCGGUUU
.-----..((((((((((---------------(((((.((.(......).)).))))))))...(((((.(((((((((.....)).)))))).).)))))..))))))).... ( -25.60)
>DroEre_CAF1 6443 95 + 1
A-----AAUGUAAUUGGU---------------UGGGGCCAGAUAAAGUUGUGGCCCCAAUUUAGAUGGUGCAAAAUGGGUGACUCCAUGUUUUCGGGCUAUUAAAUUGCGGUUU
.-----..((((((((((---------------((((((((.(......).)))))))))))..((((((.((((((((....))....))))).).)))))).))))))).... ( -33.00)
>DroYak_CAF1 20534 95 + 1
A-----AAUGUAAUUGGU---------------UGGGGCCAGAUAAAGUUGUGACCCCGAUUUAGAUGGUGCAAAAUAGGUGACUCCAUGUUUUCGGGCUAUUAAAUUGCGGUUU
.-----..((((((((((---------------(((((.((.(......).)).))))))))..((((((.(((((((((.....)).)))))).).)))))).))))))).... ( -26.80)
>DroPer_CAF1 23616 115 + 1
ACACAAAAUGCGCUUUGUGGCAUAUCCGAUUUGGGUGCAUGAGCUCUUAAUUCCUUAACUUUUGAGUGCACAAAAUGAAUGCAAGAUUUUACUCGCAACCGCAAUCGUUUCGCUU
.((((((......))))))((..(..((((((((((((....((((.................))))))))........(((.((......)).))).))).)))))..).)).. ( -23.13)
>consensus
A_____AAUGUAAUUGGU_______________UGGGGCCAGAUAAAGUUGUGACCCCGAUUUAGAUGGUGCAAAAUAGGUGACUCCAUGUUUUCGGGCUAUAAAAUUGCGGUUU
.........((((((..................(((((.((.(......).)).)))))......(((((.(((((((((.....)).)))))).).)))))..))))))..... (-11.36 = -10.27 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:57 2006