Locus 5137

Sequence ID X_DroMel_CAF1
Location 13,410,518 – 13,410,614
Length 96
Max. P 0.986203
window8345

overview

Window 5

Location 13,410,518 – 13,410,614
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.94
Mean single sequence MFE -24.13
Consensus MFE -17.60
Energy contribution -18.05
Covariance contribution 0.45
Combinations/Pair 1.25
Mean z-score -2.11
Structure conservation index 0.73
SVM decision value 2.03
SVM RNA-class probability 0.986203
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13410518 96 + 22224390
UUAAC-----GUAGUCUUUGCUCUUUCCGUUGCAGCGUGUUAUCAAUGUGUAUAUAUAUUUUGUAA-GAAUGCAAUAAAUGGA----AAGCCAGGACUAGAAGG--------------CG
.....-----.(((((((.(((..(((((((...((((.....(((.((((....)))).)))...-..))))....))))))----)))).))))))).....--------------.. ( -24.60)
>DroPse_CAF1 17102 114 + 1
AUAAUUUUUUGUAUUUUUUGUGUGUU-UUUUGCAGU-UGA----AAUACAACAAAAUAAAUUAUAGCAAAUGCAAUAAAGAAAAGUGAAGGCAGAAGCAGAAAAGAACCCAGAGGUGGAG
.....((((((..((((((.(.((((-(((.((.((-((.----....))))........((((.((....)).))))............))))))))).)))))))..))))))..... ( -18.70)
>DroSec_CAF1 6381 92 + 1
UUAAC-----GUAGUCUUUGCUUUUUCCGUUGCAGCGUGUUAUCAAUGUAUACAUAUAUUUUGUAA-GAAUGCAAUAAAUGGA----AAGCCAGGACUAGAA------------------
.....-----.(((((((.((((..((((((...((((.....(((.((((....)))).)))...-..))))....))))))----)))).)))))))...------------------ ( -24.60)
>DroSim_CAF1 5917 92 + 1
UUAAC-----GUAGUCUUUGCUUUUUCCGUUGCAGCGUGUUAUCAAUGUAUAUAUACAUUUUGUAA-GAAUGCAAUAAAUGGA----AAGCCAGGACUAGAA------------------
.....-----.(((((((.((((..((((((...((((.((((.((((((....))))))..))))-..))))....))))))----)))).)))))))...------------------ ( -25.90)
>DroEre_CAF1 733 94 + 1
CUAAC-----GUAGUCUUUGCUUUUUCCGUUGCAGCGUGCUAUCA--GUGUAUAUAUAUUUUGUAA-GAAUGCAAUAAAUGGA----AAGCCAGGACUAGAAGA--------------CG
.....-----.(((((((.((((..((((((...((((.((..((--(.(((....))).)))..)-).))))....))))))----)))).))))))).....--------------.. ( -23.30)
>DroYak_CAF1 14748 101 + 1
CUAAC-----GUAGUCUUUGCUUUUUCCGUUGCAGCGUGUUAUCAAUGUGUAUAUAUAUUUUGUAA-GAAUGCAAUAAAUGGAAG-AAAGCCAGGACUAGAAGAG------------GCG
((...-----.(((((((.((((((((((((...((((.....(((.((((....)))).)))...-..))))....))))).))-))))).)))))))....))------------... ( -27.70)
>consensus
UUAAC_____GUAGUCUUUGCUUUUUCCGUUGCAGCGUGUUAUCAAUGUAUAUAUAUAUUUUGUAA_GAAUGCAAUAAAUGGA____AAGCCAGGACUAGAAGA______________CG
...........(((((((.((((..((((((...((((.....(((.((((....)))).)))......))))....))))))....)))).)))))))..................... (-17.60 = -18.05 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:52 2006