Locus 5136

Sequence ID X_DroMel_CAF1
Location 13,410,296 – 13,410,391
Length 95
Max. P 0.968145
window8344

overview

Window 4

Location 13,410,296 – 13,410,391
Length 95
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 75.00
Mean single sequence MFE -17.93
Consensus MFE -10.69
Energy contribution -12.26
Covariance contribution 1.56
Combinations/Pair 1.17
Mean z-score -2.14
Structure conservation index 0.60
SVM decision value 1.62
SVM RNA-class probability 0.968145
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13410296 95 + 22224390
AAAAAACAGUUAAAACAGUACGCUUAAAAUUAUUUAGCUAUGCUAGUUAUAUAUUAACUAGCACACAAAUUGUGCUCAUAAAGUAGCGUAUAUCA--
.................(((((((.....((((..(((..(((((((((.....))))))))).((.....))))).))))...)))))))....-- ( -21.10)
>DroSec_CAF1 6131 94 + 1
GAAA---AGUUGAAACAGUGCGCUUUAAUUUAUUUAGCUAUGGCAGUUAUAUAUUAACUAACACACAAAUUGUGUCCAUAGAGUAGCGUUUAUCAAC
....---.(((((......(((((.............((((((.(((((.....))))).(((((.....)))))))))))...)))))...))))) ( -20.09)
>DroEre_CAF1 424 91 + 1
AAA----AUUUAUAACACUACGCUCUAAAGUAUUUAGUUAUGGCAGUUAA--AUGAACUAACACAAUAAUUGUGACCAUAAAAUAGCUUGCAGUAAC
...----..............(((...((((......((((((.((((..--...))))..((((.....)))).))))))....))))..)))... ( -12.60)
>consensus
AAAA___AGUUAAAACAGUACGCUUUAAAUUAUUUAGCUAUGGCAGUUAUAUAUUAACUAACACACAAAUUGUGACCAUAAAGUAGCGUAUAUCAAC
.................(((((((.............((((((.(((((.....))))).(((((.....)))))))))))...)))))))...... (-10.69 = -12.26 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:51 2006