| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,408,970 – 13,409,075 |
| Length | 105 |
| Max. P | 0.553753 |
| Location | 13,408,970 – 13,409,075 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 89.92 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -21.36 |
| Energy contribution | -21.92 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13408970 105 + 22224390 UCUCAAUCCUCUCUUGCCAGCCCGUUUCUCCUUCGAACGGGCAGAA-AACCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCUCCUUAAGGGCGA ..............(((..((((((((.......))))))))....-....(((((((....)))).)))..........))).....((.(((.....))))).. ( -25.40) >DroSec_CAF1 4820 106 + 1 UCUCAAUCCUCUCCAGCCAGCCCGUUUCUCUUCCGAACGGGCGGAAAAACCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCUCCUUAAGGGCGA ...............(((.((((((((.......))))))))(((......(((((((....)))).)))..........((......)))))........))).. ( -28.10) >DroSim_CAF1 4752 106 + 1 UCUCAAUCCUCUCCAGCCUGCCCGUUUCUCCUCCGAACGGGCGGAAAAACCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCUCCUUAAGGGCGA ...............((((((((((((.......))))))))(((......(((((((....)))).)))..........((......))))).......)))).. ( -28.80) >DroYak_CAF1 13159 102 + 1 ACUCAAUCGUCUGAUGGCAACCCGUUUUUCCUCCAAACGGACGGAA-AGCCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUC---CUUGAGGGCGA ...((.(((((...(((......(((((((.(((....))).))))-))))))..))))).))(((((.....((((...((......))..---..))))))))) ( -29.80) >consensus UCUCAAUCCUCUCCAGCCAGCCCGUUUCUCCUCCGAACGGGCGGAA_AACCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCUCCUUAAGGGCGA ...((.((.((........((((((((.......))))))))((......))...)).)).))((((((...........((......))..........)))))) (-21.36 = -21.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:50 2006