Locus 5134

Sequence ID X_DroMel_CAF1
Location 13,408,148 – 13,408,240
Length 92
Max. P 0.566281
window8342

overview

Window 2

Location 13,408,148 – 13,408,240
Length 92
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -23.40
Consensus MFE -16.14
Energy contribution -17.50
Covariance contribution 1.36
Combinations/Pair 1.04
Mean z-score -1.62
Structure conservation index 0.69
SVM decision value 0.07
SVM RNA-class probability 0.566281
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13408148 92 + 22224390
UCAUUUCUGAAAACUUACG-CUCUGCGUGGGCGGAAAACUGUGCGUA-AACGCGCGUGUGUGUGUGUGUGUGAGUUUUCUUUUGCCAACAAAUA
........(((((((((((-((((((....)))))..((((((((..-..)))))).))........))))))))))))............... ( -29.70)
>DroSim_CAF1 3941 83 + 1
UCAUUUUUGAAAACUUACG-CUCUGCGUGGGCGGAAAACUGUGCGUGCAACGCG----------UGUGUGAGAGUUUUCUUUUGCCAACAAAUA
........((((((((.((-(.(((((((.(((.(......).))).).)))))----------.).))).))))))))............... ( -22.80)
>DroYak_CAF1 12370 73 + 1
UCAUUUUUGAAAACUUACGACUCUACGUGGGCGGAAAACUGUGCGU---------------------GUGUGAGUUUUCUUUUGCCAACAAAUA
........(((((((((((....(((((..((((....))))))))---------------------))))))))))))............... ( -17.70)
>consensus
UCAUUUUUGAAAACUUACG_CUCUGCGUGGGCGGAAAACUGUGCGU__AACGCG__________UGUGUGUGAGUUUUCUUUUGCCAACAAAUA
........((((((((((......((((..((((....))))))))...(((((((......)))))))))))))))))............... (-16.14 = -17.50 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:49 2006