Locus 5132

Sequence ID X_DroMel_CAF1
Location 13,407,106 – 13,407,205
Length 99
Max. P 0.981753
window8340

overview

Window 0

Location 13,407,106 – 13,407,205
Length 99
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 79.50
Mean single sequence MFE -23.69
Consensus MFE -13.38
Energy contribution -15.00
Covariance contribution 1.62
Combinations/Pair 1.12
Mean z-score -2.85
Structure conservation index 0.56
SVM decision value 1.90
SVM RNA-class probability 0.981753
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13407106 99 - 22224390
----------CCACGCUCG-CAAUGGGUGCCAAAAACU-UUUUAGACCAAAAUUGCUACGGCAACAGAGAAAAGAACCCUUUUCUACGCUU--AUUCCCGCUGCUCCCACGCA
----------........(-(..((((.((........-.............((((....))))...(((((((....)))))))..((..--......)).)).)))).)). ( -22.40)
>DroSec_CAF1 3012 101 - 1
----------CCCCGCUCCCCGCUGGGUGCCAAAAAGUUUUUUAGACCAAAGUUGCUACGGCAACAGAGAAAAAAACCCUUUUCUACGUUU--AUUCCCACUGCUCCCACGCA
----------...........((((((.((.....(((....(((((....(((((....)))))..((((((......))))))..))))--).....))))).)))).)). ( -26.30)
>DroSim_CAF1 2915 99 - 1
----------CCCCGCUCG-CAAUGGGUGCCAAAAAGUUUUUUAGACCAAAGUUGCUACGGCAACAGAGAAA-AAACCCUUUUCUACGUUU--AUUCCCACUGCUCCCACGCA
----------........(-(..((((.((.....(((....(((((....(((((....)))))..(((((-(.....))))))..))))--).....))))).)))).)). ( -24.70)
>DroYak_CAF1 11275 105 - 1
CCACCCCCCCCCCCACUCG-CAAA-------AAAAAACUUUUUAGAGCAAAGUUGCCACGGCAGCCGGGAAAAAACCCCUUUUCUACUUUUUUUUUUCCACUGCUCCCACGCA
..................(-(.((-------(((....))))).(((((..(((((....))))).(((((((((...............)))))))))..)))))....)). ( -21.36)
>consensus
__________CCCCGCUCG_CAAUGGGUGCCAAAAAGUUUUUUAGACCAAAGUUGCUACGGCAACAGAGAAAAAAACCCUUUUCUACGUUU__AUUCCCACUGCUCCCACGCA
.......................((((.((.....................(((((....)))))..((((((......)))))).................)).)))).... (-13.38 = -15.00 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:47 2006