Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,483,334 – 1,483,429 |
Length | 95 |
Max. P | 0.624576 |
Location | 1,483,334 – 1,483,429 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 84.67 |
Mean single sequence MFE | -18.85 |
Consensus MFE | -12.79 |
Energy contribution | -12.85 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.67 |
Structure conservation index | 0.68 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1483334 95 - 22224390 CUAAUUAAAAUAAUGCGCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCGCAAAGUCGCGCACAAUUGCGACGCCAAGUGCUGGGCAAGAUGGGUUG .............(((((((((...(((.....)))..)))...))))))..((((((......))))))(((........)))........... ( -24.10) >DroVir_CAF1 30333 77 - 1 CUAAUUAAAAUAAUGCGCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCACAAGG-CGUGCACAAUUGCGACGCCGAGAA----------------- .............(((..((((...(((.....)))..))))...)))...((-((((((....))).))))).....----------------- ( -17.30) >DroPse_CAF1 79858 79 - 1 CUAAUUAAAAUAAUGCUCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCGCAAAGUCGCGAACAAUUGCGACGCCAAGUAC---------------- .............((((..((.................(((......)))..(((((((....)))))))))..)))).---------------- ( -17.00) >DroPer_CAF1 80254 79 - 1 CUAAUUAAAAUAAUGCUCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCGCAAAGUCGCGAACAAUUGCGACGCCAAGUAC---------------- .............((((..((.................(((......)))..(((((((....)))))))))..)))).---------------- ( -17.00) >consensus CUAAUUAAAAUAAUGCGCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCGCAAAGUCGCGAACAAUUGCGACGCCAAGUAC________________ .(((((((.....(((...))).)))))))..............(((.....((((((......)))))))))...................... (-12.79 = -12.85 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:27 2006