| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,393,172 – 13,393,272 |
| Length | 100 |
| Max. P | 0.642100 |
| Location | 13,393,172 – 13,393,272 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 82.59 |
| Mean single sequence MFE | -31.96 |
| Consensus MFE | -20.34 |
| Energy contribution | -20.86 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.642100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13393172 100 - 22224390 UCUCAUCAACGAGUCCGGCAAUUUCAAUUGUUGCCCA-GGACUUUUUGCAAUUGGCAUAACCAAUGAGGCGGU-UGGU-UGAGAGGGGCU---CCCUCAAAGGUGG ((((((((((((((((((((((.......))))))..-))))))..(((.(((((.....)))))...)))))-))).-)))))((((..---.))))........ ( -35.20) >DroSec_CAF1 5791 99 - 1 UCUCAUCAACGAGUCCGGCAAUUUCAAUUGUUGCCCAAGGACUUUUUGCAAUUGGCAUAACCAAUGAGGCGGUUUGGU-GGAGAGGGGCU---CCCCGCAAGG--- (((((((((.((((((((((((.......))))))...)))))).((((.(((((.....)))))...)))).)))))-.))))(((...---.)))......--- ( -34.10) >DroSim_CAF1 9214 83 - 1 UCUCAUCAACGAGUCCGGCAAUUUCAAUUGUUGCCCA-GGACUUUUUGCAAUUGGCAUAACCAAUGAGGCGGU-UGGU-UGAGAGG-------------------- ((((((((((((((((((((((.......))))))..-))))))..(((.(((((.....)))))...)))))-))).-)))))..-------------------- ( -32.10) >DroEre_CAF1 8336 98 - 1 UCUCAUCAACGAGUCCGGCAAUUUCAAUUGUUGC-CA-GCACUU-UUGCAACUGGCAUAACCAAUGAGGCGGU-UGGU-UGAAAGGGGAGUGGCGCUCAAAGG--- ..........((((((((((((.......)))))-).-((.(((-((.((((..((....((.....))..))-..))-)).)))))..)))).)))).....--- ( -28.80) >DroAna_CAF1 6010 97 - 1 UCUCAUCAACGAGUCCGGCAAUUUCAAUUGUUGCUCC-GGACUUUUUGCAAUUGGCAUAACCAAUGAGGCGGU-UGGGGUUUGGGGGAUU------UC-AAGGGGA ((((......((((((((((((.......))))))((-(((((((((((.(((((.....)))))...)))).-.))))))))).)))))------).-...)))) ( -29.60) >consensus UCUCAUCAACGAGUCCGGCAAUUUCAAUUGUUGCCCA_GGACUUUUUGCAAUUGGCAUAACCAAUGAGGCGGU_UGGU_UGAGAGGGGCU___C_CUC_AAGG___ ((((......((((((((((((.......))))))...)))))).((((.(((((.....)))))...))))..........)))).................... (-20.34 = -20.86 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:42 2006