| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,386,821 – 13,386,941 |
| Length | 120 |
| Max. P | 0.990684 |
| Location | 13,386,821 – 13,386,941 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.80 |
| Mean single sequence MFE | -44.07 |
| Consensus MFE | -43.05 |
| Energy contribution | -43.50 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.98 |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.990684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13386821 120 + 22224390 ACCACUGUGCCGCCAACUGGAAAUCCUGCCCAUCCUCAUUCACAUAUUGGUCGCUUUUGUGGCUUUGUAAUGCAAAUGUUUGGGCAACAACCCUGGCUGGUGAUAGUGGAGCUCGACUGA .((((((((((((((...((....))((((((....((((..(((((.((((((....))))))..)).)))..))))..)))))).......)))).))).)))))))........... ( -41.70) >DroSim_CAF1 2591 117 + 1 ACCACUGUGCCGCCAGCUGGAAAUCCUGCCCAUCCUCAUUCACAUAUUGGUCGCUUUUGUGGCUUUGUAAUGCAAAUGUUUGGGCA---ACCCUGGCUGGUGAUAGUGGAGCUCGACUGC .(((((((..(((((((..(......((((((....((((..(((((.((((((....))))))..)).)))..))))..))))))---...)..)))))))))))))).((......)) ( -45.40) >DroEre_CAF1 2312 117 + 1 ACCACUGUGCCGCCAGUUGGAAAUCCAGCCCAUCCUCAUUCACAUAUUGGUCGCUUUUGUGGCUUUGUAAUGCAAAUGUUUGGGCA---ACCCUGGCUGGUGAUAGUGGAGCUCGACUGU .(((((((((((((((.(((....)))(((((....((((..(((((.((((((....))))))..)).)))..))))..))))).---...))))).))).)))))))........... ( -45.10) >consensus ACCACUGUGCCGCCAGCUGGAAAUCCUGCCCAUCCUCAUUCACAUAUUGGUCGCUUUUGUGGCUUUGUAAUGCAAAUGUUUGGGCA___ACCCUGGCUGGUGAUAGUGGAGCUCGACUGA .(((((((..(((((((..(......((((((....((((..(((((.((((((....))))))..)).)))..))))..))))))......)..))))))))))))))........... (-43.05 = -43.50 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:38 2006