Locus 5124

Sequence ID X_DroMel_CAF1
Location 13,385,372 – 13,385,484
Length 112
Max. P 0.694372
window8328

overview

Window 8

Location 13,385,372 – 13,385,484
Length 112
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.82
Mean single sequence MFE -19.78
Consensus MFE -15.92
Energy contribution -16.03
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.59
Structure conservation index 0.80
SVM decision value 0.34
SVM RNA-class probability 0.694372
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13385372 112 + 22224390
AACCCAAAUAAAAAUAUUUAACUACAUAUUCUGGGAAAAUCAUGGAAAUCGGGGCAAACCGAUAAAGUAAGGUCGGACAUGAAUUUAAAUAAUCAUAAGCCGAGACCCAAAA--------
..((((((((................)))).)))).......(((..(((((......))))).........((((..((((..........))))...))))...)))...-------- ( -19.59)
>DroSim_CAF1 1215 112 + 1
AACCCAUAUAUAAAUAUUUAGCUACAUAUUCUGGGAAAAUCAUGGAAAUCGGGGCAAACCGAUAAAGUAAGGUCGGACAUGAAUUUAAAUAAUCAUAAGCCGAGACCCAAAA--------
..((((.((((..............))))..)))).......(((..(((((......))))).........((((..((((..........))))...))))...)))...-------- ( -19.64)
>DroEre_CAF1 1095 104 + 1
AAUCCAUAU----------------UUGUUCUGUGAAAAUCAUGGAAAUCGGAGCAAACCGAUAAAGUAAGGUCGGACAUGAAUUUAAAUAAUCAUAAGCCGAGACCCGAAACGAAGAAA
...((.(((----------------((.(((((((.....)))))))(((((......))))).))))).))((((..((((..........))))...))))................. ( -20.10)
>consensus
AACCCAUAUA_AAAUAUUUA_CUACAUAUUCUGGGAAAAUCAUGGAAAUCGGGGCAAACCGAUAAAGUAAGGUCGGACAUGAAUUUAAAUAAUCAUAAGCCGAGACCCAAAA________
...............................((((............(((((......))))).........((((..((((..........))))...))))..))))........... (-15.92 = -16.03 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:37 2006