| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,384,988 – 13,385,107 |
| Length | 119 |
| Max. P | 0.558154 |
| Location | 13,384,988 – 13,385,107 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.62 |
| Mean single sequence MFE | -29.23 |
| Consensus MFE | -24.07 |
| Energy contribution | -24.07 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13384988 119 + 22224390 GGU-GAUGCUACCUUUGGCGAGGUGCGCUAUCAAACUAGCAAAGUUCAUUAAAGUGAUAAUUACAAAGGCCGUAAAAGGAACGACGUACGGCCAAGACGACAAGGAACGGAUAUACGGAU .((-(..((.(((((....)))))))((((......))))...((((......((((...))))...(((((((...(......).)))))))...........)))).....))).... ( -29.30) >DroSim_CAF1 815 109 + 1 G---GAUGCUACCUUUGGCGAGGUGCGCUAUCAAACUAGCAAAGUUCAUUAAAGUGAUAAUUACAAAGGCCGUAAAAGGAACGACGUACGGCCAAGACGACAAGGAACGGAU-------- .---...((.(((((....)))))))((((......))))...((((......((((...))))...(((((((...(......).)))))))...........))))....-------- ( -28.80) >DroEre_CAF1 747 100 + 1 GGUGGGCGCUACCUUUGGCGAGCUUCGCUAUCAAACUAGCAAAGUUCAUUAAAGUGAUAAUUACAAAGGCCGUAAAAGGAACGACGUACGGCCAAGACGA-------------------- (((((...)))))(((((.((((((.((((......)))).)))))).)))))((((...))))...(((((((...(......).))))))).......-------------------- ( -29.60) >consensus GGU_GAUGCUACCUUUGGCGAGGUGCGCUAUCAAACUAGCAAAGUUCAUUAAAGUGAUAAUUACAAAGGCCGUAAAAGGAACGACGUACGGCCAAGACGACAAGGAACGGAU________ .......((((....(((((.....)))))......)))).....((((....))))..........(((((((...(......).)))))))........................... (-24.07 = -24.07 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:36 2006