| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,382,148 – 13,382,246 |
| Length | 98 |
| Max. P | 0.982631 |
| Location | 13,382,148 – 13,382,246 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 65.74 |
| Mean single sequence MFE | -24.85 |
| Consensus MFE | -7.12 |
| Energy contribution | -8.07 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.29 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13382148 98 + 22224390 UAUCAUAGGGCUGGGCUUAGCGCAGUCAAAUGAACG--AGAA--AAUGGUUCAUUAAAAACGAAAAUAUGGCAAGG-----CGCUGAGAAAUCAA-GCUGGGCU--CACA---------- .......(((((.((((((((((.(((((((((((.--(...--..).))))))).............))))...)-----))))((....))))-))).))))--)...---------- ( -33.51) >DroPse_CAF1 22062 98 + 1 UAUCAUAGGGCUG-ACUUAGCCGGGCUAAAUGAAGCCUGGCA--AAAGGUUCAUUAAAGAUAUAAAUAUGGAAAU-----------------AAA--GAAUGCAGCACGAGAAAUUCAAA .........((((-.....((((((((......)))))))).--....((((.(((....(((....)))....)-----------------)).--)))).)))).............. ( -22.80) >DroSec_CAF1 13418 98 + 1 UAUCAUAGGGCUGGGCUUAGCGCAGUCAAAUGAACC--AGAA--AAUGGUUCAUUAAAAACGAAAAUAUGGCAAAG-----CGCUCAGAAAUCAA-GCUGGGCA--CACU---------- ..(((((.(((((.((...)).))))).((((((((--(...--..)))))))))...........)))))....(-----.((((((.......-.)))))).--)...---------- ( -31.80) >DroEre_CAF1 17517 105 + 1 UAUCAUAGGGCUG-GCUAAGCGGAGUCAAAUGAACC--AAAAAAAAGGGUUCAUUAAAAGCGAAAAUAUGGCAAAA-----CGCUGAGAAUUGAA-GGUGCACA--CUCAAAAAC---A- .......(.(((.-.((.((((......((((((((--.........))))))))....((.(.....).))....-----)))).)).......-))).)...--.........---.- ( -19.00) >DroYak_CAF1 14471 80 + 1 UAUUAUAGGGCUG-GCUUAGCGCAGUCAAAUGAACC--AGAA--AAUGGUUCAUUAAAAACG------------------------AGAACUGAA-GCUGCACA--CACA----C---A- .....((((((((-((...)).))))).((((((((--(...--..))))))))).......------------------------....)))..-........--....----.---.- ( -19.00) >DroAna_CAF1 14489 109 + 1 UAUCAUAGGGCUG-GUUUAGAAGCGUCCAAUGAACC--AGAA--AAAGGUUCAUUAAAAAUGAAAAUAUGGCCAGAGGCGGCGCCCAGGAAUAAAUGGAAUGCA--AUCAAAAAU---A- .........((..-........(((((.((((((((--....--...))))))))...............(((...))))))))(((........)))...)).--.........---.- ( -23.00) >consensus UAUCAUAGGGCUG_GCUUAGCGCAGUCAAAUGAACC__AGAA__AAUGGUUCAUUAAAAACGAAAAUAUGGCAAA______CGCU_AGAAAUAAA_GCUGCGCA__CACA________A_ ..(((((.((((...........)))).((((((((...........))))))))...........)))))................................................. ( -7.12 = -8.07 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:35 2006