Locus 5120

Sequence ID X_DroMel_CAF1
Location 13,368,413 – 13,368,504
Length 91
Max. P 0.992997
window8323

overview

Window 3

Location 13,368,413 – 13,368,504
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 65.47
Mean single sequence MFE -32.12
Consensus MFE -13.11
Energy contribution -16.45
Covariance contribution 3.34
Combinations/Pair 1.38
Mean z-score -2.62
Structure conservation index 0.41
SVM decision value 2.37
SVM RNA-class probability 0.992997
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13368413 91 + 22224390
UCCAACAUUUCAAGCAGAUCUAUGC---------UGGGCUGGGUGUCAGUUCUCUGAUGGUCACCCUGGCCAUCCUACUGCUCCUUCAGCCCGUGGAUGC
((((........((((......)))---------)((((((((.(.((((.....(((((((.....)))))))..))))).))..)))))).))))... ( -35.70)
>DroSec_CAF1 1 77 + 1
--------------CAGAUAUAUGC---------UGGGCUGGGAGUUAGUUCUCUGAUGGUUACAUUGGCCAUCCUGCUGCUCCUUCAGCCCGUGGAUGC
--------------......(((.(---------((((((((((((.(((.....(((((((.....)))))))..))))))))..))))))).).))). ( -29.70)
>DroSim_CAF1 1 74 + 1
-----------------AUCUAUGC---------UGGGCUGGGAGUUAGUUCUCUGAUGGUUACAUUGGCCAUCCUGCUGCUCCUUCAGCCCGUGGAUGC
-----------------((((((..---------.(((((((((((.(((.....(((((((.....)))))))..))))))))..)))))))))))).. ( -31.10)
>DroEre_CAF1 3891 91 + 1
UCCCACAUUUGAAGCAGCUCUAUGC---------GGGGCUGGGAGUCAGUUCACUGGUGGUUACCCUGGCCAUCCUGCUGCUCCUUCAGCCCGUGGAUGC
..((((.......(((......)))---------.((((((((((.((((.....(((((((.....)))))))..))))))))..)))))))))).... ( -39.20)
>DroYak_CAF1 5 79 + 1
GCCCACAUUUGAAGCAGUUCUAUGC---------------------CAGUUCCCUAAUGGUUAGCCUGGCCAUCCUGCUGCUCCUGCAGCCCGUGGAUGC
..((((.................((---------------------((((..((....))..)..)))))......(((((....)))))..)))).... ( -22.70)
>DroPer_CAF1 4969 94 + 1
UCUCGG--CU-CAAAGGAUCUAUCCAGUCGACCAGAGCCUGAAGCUCUGCUGCCUGAUGGGGCUUCUGGUGGUCCU---CCUCCUAAGUCCCGUUGAUGC
..((((--((-....(((....))))))))).((((((.....))))))......((((((((((..((.((....---)).)).))))))))))..... ( -34.30)
>consensus
UCCCAC__UU_AAGCAGAUCUAUGC_________UGGGCUGGGAGUCAGUUCUCUGAUGGUUACCCUGGCCAUCCUGCUGCUCCUUCAGCCCGUGGAUGC
...................................((((((((((.((((.....(((((((.....)))))))..))))))))..))))))........ (-13.11 = -16.45 +   3.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:32 2006